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De novo meta-assembly of ultra-deep sequencing data

We introduce a new divide and conquer approach to deal with the problem of de novo genome assembly in the presence of ultra-deep sequencing data (i.e. coverage of 1000x or higher). Our proposed meta-assembler Slicembler partitions the input data into optimal-sized ‘slices’ and uses a standard assemb...

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Detalles Bibliográficos
Autores principales: Mirebrahim, Hamid, Close, Timothy J., Lonardi, Stefano
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4765875/
https://www.ncbi.nlm.nih.gov/pubmed/26072514
http://dx.doi.org/10.1093/bioinformatics/btv226