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(19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis

Molecular details for RhoA/GAP catalysis of the hydrolysis of GTP to GDP are poorly understood. We use (19)F NMR chemical shifts in the MgF(3) (−) transition state analogue (TSA) complex as a spectroscopic reporter to indicate electron distribution for the γ‐PO(3) (−) oxygens in the corresponding TS...

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Autores principales: Jin, Yi, Molt, Robert W., Waltho, Jonathan P., Richards, Nigel G. J., Blackburn, G. Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770445/
https://www.ncbi.nlm.nih.gov/pubmed/26822702
http://dx.doi.org/10.1002/anie.201509477
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author Jin, Yi
Molt, Robert W.
Waltho, Jonathan P.
Richards, Nigel G. J.
Blackburn, G. Michael
author_facet Jin, Yi
Molt, Robert W.
Waltho, Jonathan P.
Richards, Nigel G. J.
Blackburn, G. Michael
author_sort Jin, Yi
collection PubMed
description Molecular details for RhoA/GAP catalysis of the hydrolysis of GTP to GDP are poorly understood. We use (19)F NMR chemical shifts in the MgF(3) (−) transition state analogue (TSA) complex as a spectroscopic reporter to indicate electron distribution for the γ‐PO(3) (−) oxygens in the corresponding TS, implying that oxygen coordinated to Mg has the greatest electron density. This was validated by QM calculations giving a picture of the electronic properties of the transition state (TS) for nucleophilic attack of water on the γ‐PO(3) (−) group based on the structure of a RhoA/GAP‐GDP‐MgF(3) (−) TSA complex. The TS model displays a network of 20 hydrogen bonds, including the GAP Arg85′ side chain, but neither phosphate torsional strain nor general base catalysis is evident. The nucleophilic water occupies a reactive location different from that in multiple ground state complexes, arising from reorientation of the Gln‐63 carboxamide by Arg85′ to preclude direct hydrogen bonding from water to the target γ‐PO(3) (−) group.
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spelling pubmed-47704452016-05-05 (19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis Jin, Yi Molt, Robert W. Waltho, Jonathan P. Richards, Nigel G. J. Blackburn, G. Michael Angew Chem Int Ed Engl Communications Molecular details for RhoA/GAP catalysis of the hydrolysis of GTP to GDP are poorly understood. We use (19)F NMR chemical shifts in the MgF(3) (−) transition state analogue (TSA) complex as a spectroscopic reporter to indicate electron distribution for the γ‐PO(3) (−) oxygens in the corresponding TS, implying that oxygen coordinated to Mg has the greatest electron density. This was validated by QM calculations giving a picture of the electronic properties of the transition state (TS) for nucleophilic attack of water on the γ‐PO(3) (−) group based on the structure of a RhoA/GAP‐GDP‐MgF(3) (−) TSA complex. The TS model displays a network of 20 hydrogen bonds, including the GAP Arg85′ side chain, but neither phosphate torsional strain nor general base catalysis is evident. The nucleophilic water occupies a reactive location different from that in multiple ground state complexes, arising from reorientation of the Gln‐63 carboxamide by Arg85′ to preclude direct hydrogen bonding from water to the target γ‐PO(3) (−) group. John Wiley and Sons Inc. 2016-01-28 2016-03-01 /pmc/articles/PMC4770445/ /pubmed/26822702 http://dx.doi.org/10.1002/anie.201509477 Text en © 2016 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Communications
Jin, Yi
Molt, Robert W.
Waltho, Jonathan P.
Richards, Nigel G. J.
Blackburn, G. Michael
(19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis
title (19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis
title_full (19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis
title_fullStr (19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis
title_full_unstemmed (19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis
title_short (19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis
title_sort (19)f nmr and dft analysis reveal structural and electronic transition state features for rhoa‐catalyzed gtp hydrolysis
topic Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770445/
https://www.ncbi.nlm.nih.gov/pubmed/26822702
http://dx.doi.org/10.1002/anie.201509477
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