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(19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis
Molecular details for RhoA/GAP catalysis of the hydrolysis of GTP to GDP are poorly understood. We use (19)F NMR chemical shifts in the MgF(3) (−) transition state analogue (TSA) complex as a spectroscopic reporter to indicate electron distribution for the γ‐PO(3) (−) oxygens in the corresponding TS...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770445/ https://www.ncbi.nlm.nih.gov/pubmed/26822702 http://dx.doi.org/10.1002/anie.201509477 |
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author | Jin, Yi Molt, Robert W. Waltho, Jonathan P. Richards, Nigel G. J. Blackburn, G. Michael |
author_facet | Jin, Yi Molt, Robert W. Waltho, Jonathan P. Richards, Nigel G. J. Blackburn, G. Michael |
author_sort | Jin, Yi |
collection | PubMed |
description | Molecular details for RhoA/GAP catalysis of the hydrolysis of GTP to GDP are poorly understood. We use (19)F NMR chemical shifts in the MgF(3) (−) transition state analogue (TSA) complex as a spectroscopic reporter to indicate electron distribution for the γ‐PO(3) (−) oxygens in the corresponding TS, implying that oxygen coordinated to Mg has the greatest electron density. This was validated by QM calculations giving a picture of the electronic properties of the transition state (TS) for nucleophilic attack of water on the γ‐PO(3) (−) group based on the structure of a RhoA/GAP‐GDP‐MgF(3) (−) TSA complex. The TS model displays a network of 20 hydrogen bonds, including the GAP Arg85′ side chain, but neither phosphate torsional strain nor general base catalysis is evident. The nucleophilic water occupies a reactive location different from that in multiple ground state complexes, arising from reorientation of the Gln‐63 carboxamide by Arg85′ to preclude direct hydrogen bonding from water to the target γ‐PO(3) (−) group. |
format | Online Article Text |
id | pubmed-4770445 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-47704452016-05-05 (19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis Jin, Yi Molt, Robert W. Waltho, Jonathan P. Richards, Nigel G. J. Blackburn, G. Michael Angew Chem Int Ed Engl Communications Molecular details for RhoA/GAP catalysis of the hydrolysis of GTP to GDP are poorly understood. We use (19)F NMR chemical shifts in the MgF(3) (−) transition state analogue (TSA) complex as a spectroscopic reporter to indicate electron distribution for the γ‐PO(3) (−) oxygens in the corresponding TS, implying that oxygen coordinated to Mg has the greatest electron density. This was validated by QM calculations giving a picture of the electronic properties of the transition state (TS) for nucleophilic attack of water on the γ‐PO(3) (−) group based on the structure of a RhoA/GAP‐GDP‐MgF(3) (−) TSA complex. The TS model displays a network of 20 hydrogen bonds, including the GAP Arg85′ side chain, but neither phosphate torsional strain nor general base catalysis is evident. The nucleophilic water occupies a reactive location different from that in multiple ground state complexes, arising from reorientation of the Gln‐63 carboxamide by Arg85′ to preclude direct hydrogen bonding from water to the target γ‐PO(3) (−) group. John Wiley and Sons Inc. 2016-01-28 2016-03-01 /pmc/articles/PMC4770445/ /pubmed/26822702 http://dx.doi.org/10.1002/anie.201509477 Text en © 2016 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution (http://creativecommons.org/licenses/by/4.0/) License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Communications Jin, Yi Molt, Robert W. Waltho, Jonathan P. Richards, Nigel G. J. Blackburn, G. Michael (19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis |
title |
(19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis |
title_full |
(19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis |
title_fullStr |
(19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis |
title_full_unstemmed |
(19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis |
title_short |
(19)F NMR and DFT Analysis Reveal Structural and Electronic Transition State Features for RhoA‐Catalyzed GTP Hydrolysis |
title_sort | (19)f nmr and dft analysis reveal structural and electronic transition state features for rhoa‐catalyzed gtp hydrolysis |
topic | Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4770445/ https://www.ncbi.nlm.nih.gov/pubmed/26822702 http://dx.doi.org/10.1002/anie.201509477 |
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