Cargando…

An Ancient Fingerprint Indicates the Common Ancestry of Rossmann-Fold Enzymes Utilizing Different Ribose-Based Cofactors

Nucleoside-based cofactors are presumed to have preceded proteins. The Rossmann fold is one of the most ancient and functionally diverse protein folds, and most Rossmann enzymes utilize nucleoside-based cofactors. We analyzed an omnipresent Rossmann ribose-binding interaction: a carboxylate side cha...

Descripción completa

Detalles Bibliográficos
Autores principales:	Laurino, Paola, Tóth-Petróczy, Ágnes, Meana-Pañeda, Rubén, Lin, Wei, Truhlar, Donald G., Tawfik, Dan S.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4777477/ https://www.ncbi.nlm.nih.gov/pubmed/26938925 http://dx.doi.org/10.1371/journal.pbio.1002396

Ejemplares similares

Insertions and deletions mediated functional divergence of Rossmann fold enzymes
por: Toledo-Patiño, Saacnicteh, et al.
Publicado: (2022)

Rossmann-toolbox: a deep learning-based protocol for the prediction and design of cofactor specificity in Rossmann fold proteins
por: Kamiński, Kamil, et al.
Publicado: (2021)

S-adenosyl-l-homocysteine Hydrolase: A Structural Perspective on the Enzyme with Two Rossmann-Fold Domains
por: Brzezinski, Krzysztof
Publicado: (2020)

Multi-path variational transition state theory for chiral molecules: the site-dependent kinetics for abstraction of hydrogen from 2-butanol by hydroperoxyl radical, analysis of hydrogen bonding in the transition state, and dramatic temperature dependence of the activation energy
por: Bao, Junwei Lucas, et al.
Publicado: (2015)

Functional and evolutionary analysis of viral proteins containing a Rossmann‐like fold
por: Medvedev, Kirill E., et al.
Publicado: (2018)

On the emergence of P-Loop NTPase and Rossmann enzymes from a Beta-Alpha-Beta ancestral fragment
por: Longo, Liam M, et al.
Publicado: (2020)

Interaction Signatures Stabilizing the NAD(P)-Binding Rossmann Fold: A Structure Network Approach
por: Bhattacharyya, Moitrayee, et al.
Publicado: (2012)

Systematic Mapping of Protein Mutational Space by Prolonged Drift Reveals the Deleterious Effects of Seemingly Neutral Mutations
por: Rockah-Shmuel, Liat, et al.
Publicado: (2015)

The RNA-bound proteome of MRSA reveals post-transcriptional roles for helix-turn-helix DNA-binding and Rossmann-fold proteins
por: Chu, Liang-Cui, et al.
Publicado: (2022)

Crystal structure of CobK reveals strand-swapping between Rossmann-fold domains and molecular basis of the reduced precorrin product trap
por: Gu, Shuang, et al.
Publicado: (2015)

The RNA repair proteins RtcAB regulate transcription activator RtcR via its CRISPR-associated Rossmann fold domain
por: Kotta-Loizou, Ioly, et al.
Publicado: (2022)

Functional analysis of Rossmann-like domains reveals convergent evolution of topology and reaction pathways
por: Medvedev, Kirill E., et al.
Publicado: (2019)

In Memory of Michael G. Rossmann: A Wise Man with a Forever Young Heart
por: Xiao, Chuan (River)
Publicado: (2021)

The CoFactor database: organic cofactors in enzyme catalysis
por: Fischer, Julia D., et al.
Publicado: (2010)

The roles of tubulin-folding cofactors in neuronal morphogenesis and disease
por: Okumura, Misako, et al.
Publicado: (2015)

Correlated Occurrence and Bypass of Frame-Shifting Insertion-Deletions (InDels) to Give Functional Proteins
por: Rockah-Shmuel, Liat, et al.
Publicado: (2013)

Derivatives of Natural Organocatalytic Cofactors and Artificial Organocatalytic Cofactors as Catalysts in Enzymes
por: Lechner, Horst, et al.
Publicado: (2022)

Ancient Ancestry Informative Markers for Identifying Fine-Scale Ancient Population Structure in Eurasians
por: Esposito, Umberto, et al.
Publicado: (2018)

AlphaFill: enriching AlphaFold models with ligands and cofactors
por: Hekkelman, Maarten L., et al.
Publicado: (2022)

Discovery of Electrophiles and Profiling of Enzyme Cofactors
por: Dettling, Suzanne E., et al.
Publicado: (2020)

High Diversity and Ancient Common Ancestry of Lymphocytic Choriomeningitis Virus
por: Albariño, Cesar G., et al.
Publicado: (2010)

Ancient DNA sheds light on the ancestry of pre-hispanic Canarian pigs
por: Olalde, Iñigo, et al.
Publicado: (2015)

Ancient Fennoscandian genomes reveal origin and spread of Siberian ancestry in Europe
por: Lamnidis, Thiseas C., et al.
Publicado: (2018)

Copper is a Cofactor of the Formylglycine‐Generating Enzyme
por: Knop, Matthias, et al.
Publicado: (2016)

Finding enzyme cofactors in Protein Data Bank
por: Mukhopadhyay, Abhik, et al.
Publicado: (2019)

Structure of the first representative of Pfam family PF04016 (DUF364) reveals enolase and Rossmann-like folds that combine to form a unique active site with a possible role in heavy-metal chelation
por: Miller, Mitchell D., et al.
Publicado: (2010)

Role of the chaperonin cofactor Hsp10 in protein folding and sorting in yeast mitochondria
Publicado: (1994)

Domain analysis of the tubulin cofactor system: a model for tubulin folding and dimerization
por: Grynberg, Marcin, et al.
Publicado: (2003)

Metal cofactor modulated folding and target recognition of HIV-1 NCp7
por: Ren, Weitong, et al.
Publicado: (2018)

Expression of tubulin folding cofactor B in mouse hepatic ischemia-reperfusion injury
por: Gong, Jianhua, et al.
Publicado: (2017)

Tubulin Folding Cofactor D Deficiency: Missing the Diagnosis With Whole Exome Sequencing
por: Quitmann, Christina M., et al.
Publicado: (2021)

Genetic Ancestry of Hadza and Sandawe Peoples Reveals Ancient Population Structure in Africa
por: Shriner, Daniel, et al.
Publicado: (2018)

A second riboswitch class for the enzyme cofactor NAD(+)
por: Panchapakesan, Shanker S.S., et al.
Publicado: (2021)

The proposed channel-enzyme transient receptor potential melastatin 2 does not possess ADP ribose hydrolase activity
por: Iordanov, Iordan, et al.
Publicado: (2016)

Redox cofactors insertion in prokaryotic molybdoenzymes occurs via a conserved folding mechanism
por: Arias-Cartin, Rodrigo, et al.
Publicado: (2016)

The cofactor-dependent folding mechanism of Drosophila cryptochrome revealed by single-molecule pulling experiments
por: Foroutannejad, Sahar, et al.
Publicado: (2023)

A vocabulary of ancient peptides at the origin of folded proteins
por: Alva, Vikram, et al.
Publicado: (2015)

A replica exchange umbrella sampling (REUS) approach to predict host–guest binding free energies in SAMPL8 challenge
por: Ghorbani, Mahdi, et al.
Publicado: (2021)

Enhanced Resistance of atnigr1 against Pseudomonas syringae pv. tomato Suggests Negative Regulation of Plant Basal Defense and Systemic Acquired Resistance by AtNIGR1 Encoding NAD(P)-Binding Rossmann-Fold in Arabidopsis thaliana
por: Al Azzawi, Tiba Nazar, et al.
Publicado: (2023)

Phenotypic mutations contribute to protein diversity and shape protein evolution
por: Romero Romero, Maria Luisa, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_676mn7j0cv0mjqt87lqrtg9fe8