GenSeed-HMM: A Tool for Progressive Assembly Using Profile HMMs as Seeds and its Application in Alpavirinae Viral Discovery from Metagenomic Data

This work reports the development of GenSeed-HMM, a program that implements seed-driven progressive assembly, an approach to reconstruct specific sequences from unassembled data, starting from short nucleotide or protein seed sequences or profile Hidden Markov Models (HMM). The program can use any o...

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Detalles Bibliográficos
Autores principales: Alves, João M. P., de Oliveira, André L., Sandberg, Tatiana O. M., Moreno-Gallego, Jaime L., de Toledo, Marcelo A. F., de Moura, Elisabeth M. M., Oliveira, Liliane S., Durham, Alan M., Mehnert, Dolores U., Zanotto, Paolo M. de A., Reyes, Alejandro, Gruber, Arthur
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2016
Materias:
Microbiology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4777721/
https://www.ncbi.nlm.nih.gov/pubmed/26973638
http://dx.doi.org/10.3389/fmicb.2016.00269

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4777721/
https://www.ncbi.nlm.nih.gov/pubmed/26973638
http://dx.doi.org/10.3389/fmicb.2016.00269

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