Cultivation-independent comprehensive investigations on bacterial communities in serofluid dish, a traditional Chinese fermented food

Serofluid dish (or Jiangshui, in Chinese), a traditional food in the Chinese culture, is made from vegetables by fermentation. In this study, bacterial community of the fermented serofluid dish was assessed by Illumina amplicon sequencing. The metagenome comprised of 49,589 average raw reads with an...

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Autores principales: Chen, Peng, Wu, Zhengrong, Zhao, Yang, Wei, Yan, Xu, Ruixiang, Yan, Lei, Li, Hongyu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2015
Materias:
Data in Brief
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778640/
https://www.ncbi.nlm.nih.gov/pubmed/26981386
http://dx.doi.org/10.1016/j.gdata.2015.12.019
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author Chen, Peng
Wu, Zhengrong
Zhao, Yang
Wei, Yan
Xu, Ruixiang
Yan, Lei
Li, Hongyu
author_facet Chen, Peng
Wu, Zhengrong
Zhao, Yang
Wei, Yan
Xu, Ruixiang
Yan, Lei
Li, Hongyu
author_sort Chen, Peng
collection PubMed
description Serofluid dish (or Jiangshui, in Chinese), a traditional food in the Chinese culture, is made from vegetables by fermentation. In this study, bacterial community of the fermented serofluid dish was assessed by Illumina amplicon sequencing. The metagenome comprised of 49,589 average raw reads with an average 11,497,917 bp and G + C content is 52.46%. This is the first report on V4 hyper-variable region of the 16S rRNA metagenome sequence employing Illumina platform to profile the microbial community of this little known fermented food from Gansu Province, China. The metagenome sequence can be accessed at NCBI, SRA database accession no. SRP065370.
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spelling pubmed-47786402016-03-15 Cultivation-independent comprehensive investigations on bacterial communities in serofluid dish, a traditional Chinese fermented food Chen, Peng Wu, Zhengrong Zhao, Yang Wei, Yan Xu, Ruixiang Yan, Lei Li, Hongyu Genom Data Data in Brief Serofluid dish (or Jiangshui, in Chinese), a traditional food in the Chinese culture, is made from vegetables by fermentation. In this study, bacterial community of the fermented serofluid dish was assessed by Illumina amplicon sequencing. The metagenome comprised of 49,589 average raw reads with an average 11,497,917 bp and G + C content is 52.46%. This is the first report on V4 hyper-variable region of the 16S rRNA metagenome sequence employing Illumina platform to profile the microbial community of this little known fermented food from Gansu Province, China. The metagenome sequence can be accessed at NCBI, SRA database accession no. SRP065370. Elsevier 2015-12-28 /pmc/articles/PMC4778640/ /pubmed/26981386 http://dx.doi.org/10.1016/j.gdata.2015.12.019 Text en © 2015 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Data in Brief
Chen, Peng
Wu, Zhengrong
Zhao, Yang
Wei, Yan
Xu, Ruixiang
Yan, Lei
Li, Hongyu
Cultivation-independent comprehensive investigations on bacterial communities in serofluid dish, a traditional Chinese fermented food
title Cultivation-independent comprehensive investigations on bacterial communities in serofluid dish, a traditional Chinese fermented food
title_full Cultivation-independent comprehensive investigations on bacterial communities in serofluid dish, a traditional Chinese fermented food
title_fullStr Cultivation-independent comprehensive investigations on bacterial communities in serofluid dish, a traditional Chinese fermented food
title_full_unstemmed Cultivation-independent comprehensive investigations on bacterial communities in serofluid dish, a traditional Chinese fermented food
title_short Cultivation-independent comprehensive investigations on bacterial communities in serofluid dish, a traditional Chinese fermented food
title_sort cultivation-independent comprehensive investigations on bacterial communities in serofluid dish, a traditional chinese fermented food
topic Data in Brief
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4778640/
https://www.ncbi.nlm.nih.gov/pubmed/26981386
http://dx.doi.org/10.1016/j.gdata.2015.12.019
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