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Intrinsic phenotypic stability of a bi-stable auto regulatory gene
Even under homogenous conditions clonal cells can assume different distinct states for generations to follow, also known as epigenetic inheritance. Such long periods of different phenotypic states can be formed due to the existence of more than one stable state in the molecule concentration, where t...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4785359/ https://www.ncbi.nlm.nih.gov/pubmed/26961811 http://dx.doi.org/10.1038/srep22951 |
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author | Besya, Azim-Berdy Grönlund, Andreas |
author_facet | Besya, Azim-Berdy Grönlund, Andreas |
author_sort | Besya, Azim-Berdy |
collection | PubMed |
description | Even under homogenous conditions clonal cells can assume different distinct states for generations to follow, also known as epigenetic inheritance. Such long periods of different phenotypic states can be formed due to the existence of more than one stable state in the molecule concentration, where the different states are explored through molecular fluctuations. By formulating a single reaction variable representing the birth and death of molecules, including transcription, translation and decay, we calculate the escape time from the phenotypic states attained from autocatalytic synthesis through a Fokker- Planck formulation and integration of an effective pseudo-potential. We calculate the stability of the phenotypic states both for cooperative binding feedback and dimer binding feedback, resulting in non-linear decay. |
format | Online Article Text |
id | pubmed-4785359 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-47853592016-03-11 Intrinsic phenotypic stability of a bi-stable auto regulatory gene Besya, Azim-Berdy Grönlund, Andreas Sci Rep Article Even under homogenous conditions clonal cells can assume different distinct states for generations to follow, also known as epigenetic inheritance. Such long periods of different phenotypic states can be formed due to the existence of more than one stable state in the molecule concentration, where the different states are explored through molecular fluctuations. By formulating a single reaction variable representing the birth and death of molecules, including transcription, translation and decay, we calculate the escape time from the phenotypic states attained from autocatalytic synthesis through a Fokker- Planck formulation and integration of an effective pseudo-potential. We calculate the stability of the phenotypic states both for cooperative binding feedback and dimer binding feedback, resulting in non-linear decay. Nature Publishing Group 2016-03-10 /pmc/articles/PMC4785359/ /pubmed/26961811 http://dx.doi.org/10.1038/srep22951 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Besya, Azim-Berdy Grönlund, Andreas Intrinsic phenotypic stability of a bi-stable auto regulatory gene |
title | Intrinsic phenotypic stability of a bi-stable auto regulatory gene |
title_full | Intrinsic phenotypic stability of a bi-stable auto regulatory gene |
title_fullStr | Intrinsic phenotypic stability of a bi-stable auto regulatory gene |
title_full_unstemmed | Intrinsic phenotypic stability of a bi-stable auto regulatory gene |
title_short | Intrinsic phenotypic stability of a bi-stable auto regulatory gene |
title_sort | intrinsic phenotypic stability of a bi-stable auto regulatory gene |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4785359/ https://www.ncbi.nlm.nih.gov/pubmed/26961811 http://dx.doi.org/10.1038/srep22951 |
work_keys_str_mv | AT besyaazimberdy intrinsicphenotypicstabilityofabistableautoregulatorygene AT gronlundandreas intrinsicphenotypicstabilityofabistableautoregulatorygene |