Cargando…
Can Invalid Bioactives Undermine Natural Product-Based Drug Discovery?
[Image: see text] High-throughput biology has contributed a wealth of data on chemicals, including natural products (NPs). Recently, attention was drawn to certain, predominantly synthetic, compounds that are responsible for disproportionate percentages of hits but are false actives. Spurious bioass...
Autores principales: | , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2015
|
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791574/ https://www.ncbi.nlm.nih.gov/pubmed/26505758 http://dx.doi.org/10.1021/acs.jmedchem.5b01009 |
_version_ | 1782421114786414592 |
---|---|
author | Bisson, Jonathan McAlpine, James B. Friesen, J. Brent Chen, Shao-Nong Graham, James Pauli, Guido F. |
author_facet | Bisson, Jonathan McAlpine, James B. Friesen, J. Brent Chen, Shao-Nong Graham, James Pauli, Guido F. |
author_sort | Bisson, Jonathan |
collection | PubMed |
description | [Image: see text] High-throughput biology has contributed a wealth of data on chemicals, including natural products (NPs). Recently, attention was drawn to certain, predominantly synthetic, compounds that are responsible for disproportionate percentages of hits but are false actives. Spurious bioassay interference led to their designation as pan-assay interference compounds (PAINS). NPs lack comparable scrutiny, which this study aims to rectify. Systematic mining of 80+ years of the phytochemistry and biology literature, using the NAPRALERT database, revealed that only 39 compounds represent the NPs most reported by occurrence, activity, and distinct activity. Over 50% are not explained by phenomena known for synthetic libraries, and all had manifold ascribed bioactivities, designating them as invalid metabolic panaceas (IMPs). Cumulative distributions of ∼200,000 NPs uncovered that NP research follows power-law characteristics typical for behavioral phenomena. Projection into occurrence–bioactivity–effort space produces the hyperbolic black hole of NPs, where IMPs populate the high-effort base. |
format | Online Article Text |
id | pubmed-4791574 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-47915742016-03-16 Can Invalid Bioactives Undermine Natural Product-Based Drug Discovery? Bisson, Jonathan McAlpine, James B. Friesen, J. Brent Chen, Shao-Nong Graham, James Pauli, Guido F. J Med Chem [Image: see text] High-throughput biology has contributed a wealth of data on chemicals, including natural products (NPs). Recently, attention was drawn to certain, predominantly synthetic, compounds that are responsible for disproportionate percentages of hits but are false actives. Spurious bioassay interference led to their designation as pan-assay interference compounds (PAINS). NPs lack comparable scrutiny, which this study aims to rectify. Systematic mining of 80+ years of the phytochemistry and biology literature, using the NAPRALERT database, revealed that only 39 compounds represent the NPs most reported by occurrence, activity, and distinct activity. Over 50% are not explained by phenomena known for synthetic libraries, and all had manifold ascribed bioactivities, designating them as invalid metabolic panaceas (IMPs). Cumulative distributions of ∼200,000 NPs uncovered that NP research follows power-law characteristics typical for behavioral phenomena. Projection into occurrence–bioactivity–effort space produces the hyperbolic black hole of NPs, where IMPs populate the high-effort base. American Chemical Society 2015-10-27 2016-03-10 /pmc/articles/PMC4791574/ /pubmed/26505758 http://dx.doi.org/10.1021/acs.jmedchem.5b01009 Text en Copyright © 2015 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Bisson, Jonathan McAlpine, James B. Friesen, J. Brent Chen, Shao-Nong Graham, James Pauli, Guido F. Can Invalid Bioactives Undermine Natural Product-Based Drug Discovery? |
title | Can Invalid Bioactives
Undermine Natural Product-Based
Drug Discovery? |
title_full | Can Invalid Bioactives
Undermine Natural Product-Based
Drug Discovery? |
title_fullStr | Can Invalid Bioactives
Undermine Natural Product-Based
Drug Discovery? |
title_full_unstemmed | Can Invalid Bioactives
Undermine Natural Product-Based
Drug Discovery? |
title_short | Can Invalid Bioactives
Undermine Natural Product-Based
Drug Discovery? |
title_sort | can invalid bioactives
undermine natural product-based
drug discovery? |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791574/ https://www.ncbi.nlm.nih.gov/pubmed/26505758 http://dx.doi.org/10.1021/acs.jmedchem.5b01009 |
work_keys_str_mv | AT bissonjonathan caninvalidbioactivesunderminenaturalproductbaseddrugdiscovery AT mcalpinejamesb caninvalidbioactivesunderminenaturalproductbaseddrugdiscovery AT friesenjbrent caninvalidbioactivesunderminenaturalproductbaseddrugdiscovery AT chenshaonong caninvalidbioactivesunderminenaturalproductbaseddrugdiscovery AT grahamjames caninvalidbioactivesunderminenaturalproductbaseddrugdiscovery AT pauliguidof caninvalidbioactivesunderminenaturalproductbaseddrugdiscovery |