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Can Invalid Bioactives Undermine Natural Product-Based Drug Discovery?

[Image: see text] High-throughput biology has contributed a wealth of data on chemicals, including natural products (NPs). Recently, attention was drawn to certain, predominantly synthetic, compounds that are responsible for disproportionate percentages of hits but are false actives. Spurious bioass...

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Autores principales: Bisson, Jonathan, McAlpine, James B., Friesen, J. Brent, Chen, Shao-Nong, Graham, James, Pauli, Guido F.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: American Chemical Society 2015
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791574/
https://www.ncbi.nlm.nih.gov/pubmed/26505758
http://dx.doi.org/10.1021/acs.jmedchem.5b01009
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author Bisson, Jonathan
McAlpine, James B.
Friesen, J. Brent
Chen, Shao-Nong
Graham, James
Pauli, Guido F.
author_facet Bisson, Jonathan
McAlpine, James B.
Friesen, J. Brent
Chen, Shao-Nong
Graham, James
Pauli, Guido F.
author_sort Bisson, Jonathan
collection PubMed
description [Image: see text] High-throughput biology has contributed a wealth of data on chemicals, including natural products (NPs). Recently, attention was drawn to certain, predominantly synthetic, compounds that are responsible for disproportionate percentages of hits but are false actives. Spurious bioassay interference led to their designation as pan-assay interference compounds (PAINS). NPs lack comparable scrutiny, which this study aims to rectify. Systematic mining of 80+ years of the phytochemistry and biology literature, using the NAPRALERT database, revealed that only 39 compounds represent the NPs most reported by occurrence, activity, and distinct activity. Over 50% are not explained by phenomena known for synthetic libraries, and all had manifold ascribed bioactivities, designating them as invalid metabolic panaceas (IMPs). Cumulative distributions of ∼200,000 NPs uncovered that NP research follows power-law characteristics typical for behavioral phenomena. Projection into occurrence–bioactivity–effort space produces the hyperbolic black hole of NPs, where IMPs populate the high-effort base.
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spelling pubmed-47915742016-03-16 Can Invalid Bioactives Undermine Natural Product-Based Drug Discovery? Bisson, Jonathan McAlpine, James B. Friesen, J. Brent Chen, Shao-Nong Graham, James Pauli, Guido F. J Med Chem [Image: see text] High-throughput biology has contributed a wealth of data on chemicals, including natural products (NPs). Recently, attention was drawn to certain, predominantly synthetic, compounds that are responsible for disproportionate percentages of hits but are false actives. Spurious bioassay interference led to their designation as pan-assay interference compounds (PAINS). NPs lack comparable scrutiny, which this study aims to rectify. Systematic mining of 80+ years of the phytochemistry and biology literature, using the NAPRALERT database, revealed that only 39 compounds represent the NPs most reported by occurrence, activity, and distinct activity. Over 50% are not explained by phenomena known for synthetic libraries, and all had manifold ascribed bioactivities, designating them as invalid metabolic panaceas (IMPs). Cumulative distributions of ∼200,000 NPs uncovered that NP research follows power-law characteristics typical for behavioral phenomena. Projection into occurrence–bioactivity–effort space produces the hyperbolic black hole of NPs, where IMPs populate the high-effort base. American Chemical Society 2015-10-27 2016-03-10 /pmc/articles/PMC4791574/ /pubmed/26505758 http://dx.doi.org/10.1021/acs.jmedchem.5b01009 Text en Copyright © 2015 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes.
spellingShingle Bisson, Jonathan
McAlpine, James B.
Friesen, J. Brent
Chen, Shao-Nong
Graham, James
Pauli, Guido F.
Can Invalid Bioactives Undermine Natural Product-Based Drug Discovery?
title Can Invalid Bioactives Undermine Natural Product-Based Drug Discovery?
title_full Can Invalid Bioactives Undermine Natural Product-Based Drug Discovery?
title_fullStr Can Invalid Bioactives Undermine Natural Product-Based Drug Discovery?
title_full_unstemmed Can Invalid Bioactives Undermine Natural Product-Based Drug Discovery?
title_short Can Invalid Bioactives Undermine Natural Product-Based Drug Discovery?
title_sort can invalid bioactives undermine natural product-based drug discovery?
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4791574/
https://www.ncbi.nlm.nih.gov/pubmed/26505758
http://dx.doi.org/10.1021/acs.jmedchem.5b01009
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