Acceleration of short and long DNA read mapping without loss of accuracy using suffix array

HPG Aligner applies suffix arrays for DNA read mapping. This implementation produces a highly sensitive and extremely fast mapping of DNA reads that scales up almost linearly with read length. The approach presented here is faster (over 20× for long reads) and more sensitive (over 98% in a wide rang...

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Detalles Bibliográficos
Autores principales: Tárraga, Joaquín, Arnau, Vicente, Martínez, Héctor, Moreno, Raul, Cazorla, Diego, Salavert-Torres, José, Blanquer-Espert, Ignacio, Dopazo, Joaquín, Medina, Ignacio
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2014
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4816028/
https://www.ncbi.nlm.nih.gov/pubmed/25143289
http://dx.doi.org/10.1093/bioinformatics/btu553

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4816028/
https://www.ncbi.nlm.nih.gov/pubmed/25143289
http://dx.doi.org/10.1093/bioinformatics/btu553

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