Cargando…

Analysis of long-range interactions in primary human cells identifies cooperative CFTR regulatory elements

A mechanism by which control DNA elements regulate transcription over large linear genomic distances is by achieving close physical proximity with genes, and looping of the intervening chromatin paths. Alterations of such regulatory ‘chromatin looping’ systems are likely to play a critical role in h...

Descripción completa

Detalles Bibliográficos
Autores principales:	Moisan, Stéphanie, Berlivet, Soizik, Ka, Chandran, Gac, Gérald Le, Dostie, Josée, Férec, Claude
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Gene regulation, Chromatin and Epigenetics
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4824072/ https://www.ncbi.nlm.nih.gov/pubmed/26615198 http://dx.doi.org/10.1093/nar/gkv1300

Ejemplares similares

Cell-type-specific long-range looping interactions identify distant regulatory elements of the CFTR gene
por: Gheldof, Nele, et al.
Publicado: (2010)

Nucleosome occupancy reveals regulatory elements of the CFTR promoter
por: Ott, Christopher J., et al.
Publicado: (2012)

Differential contribution of cis-regulatory elements to higher order chromatin structure and expression of the CFTR locus
por: Yang, Rui, et al.
Publicado: (2016)

Looping of upstream cis-regulatory elements is required for CFTR expression in human airway epithelial cells
por: NandyMazumdar, Monali, et al.
Publicado: (2020)

Reciprocal regulation of chromatin state and architecture by HOTAIRM1 contributes to temporal collinear HOXA gene activation
por: Wang, Xue Q. D., et al.
Publicado: (2017)

Nucleosome mapping across the CFTR locus identifies novel regulatory factors
por: Yigit, Erbay, et al.
Publicado: (2013)

High-throughput identification of long-range regulatory elements and their target promoters in the human genome
por: Hwang, Yih-Chii, et al.
Publicado: (2013)

An insulator element 3′ to the CFTR gene binds CTCF and reveals an active chromatin hub in primary cells
por: Blackledge, Neil P., et al.
Publicado: (2009)

Hox in motion: tracking HoxA cluster conformation during differentiation
por: Rousseau, Mathieu, et al.
Publicado: (2014)

The three-dimensional architecture of Hox cluster silencing
por: Ferraiuolo, Maria A., et al.
Publicado: (2010)

EWS-FLI1 regulates and cooperates with core regulatory circuitry in Ewing sarcoma
por: Shi, Xianping, et al.
Publicado: (2020)

Characterization of new regulatory elements within the Drosophila bithorax complex
por: Pérez-Lluch, Sílvia, et al.
Publicado: (2008)

Cooperativity and interaction energy threshold effects in recognition of the −10 promoter element by bacterial RNA polymerase
por: Mekler, Vladimir, et al.
Publicado: (2013)

Cooperation between myogenic regulatory factors and SIX family transcription factors is important for myoblast differentiation
por: Liu, Yubing, et al.
Publicado: (2010)

Integrative analysis of epigenetics data identifies gene-specific regulatory elements
por: Schmidt, Florian, et al.
Publicado: (2021)

Global identification of the genetic networks and cis-regulatory elements of the cold response in zebrafish
por: Hu, Peng, et al.
Publicado: (2015)

Regulatory elements can be essential for maintaining broad chromatin organization and cell viability
por: Liu, Ying, et al.
Publicado: (2022)

The ‘Alu-ome’ shapes the epigenetic environment of regulatory elements controlling cellular defense
por: Costallat, Mickael, et al.
Publicado: (2022)

Orientation-dependent interaction between Drosophila insulators is a property of this class of regulatory elements
por: Kyrchanova, Olga, et al.
Publicado: (2008)

Epigenetic regulatory elements associate with specific histone modifications to prevent silencing of telomeric genes
por: Majocchi, Stefano, et al.
Publicado: (2014)

Gene-specific factors determine mitotic expression and bookmarking via alternate regulatory elements
por: Arampatzi, Panagiota, et al.
Publicado: (2013)

Genetic context effects can override canonical cis regulatory elements in Escherichia coli
por: Scholz, Scott A, et al.
Publicado: (2022)

CFTR Cooperative Cis-Regulatory Elements in Intestinal Cells
por: Collobert, Mégane, et al.
Publicado: (2021)

The activity of the HIV-1 IRES is stimulated by oxidative stress and controlled by a negative regulatory element
por: Gendron, Karine, et al.
Publicado: (2011)

Correlated changes between regulatory cis elements and condition-specific expression in paralogous gene families
por: Singh, Larry N., et al.
Publicado: (2010)

RAR/RXR binding dynamics distinguish pluripotency from differentiation associated cis-regulatory elements
por: Chatagnon, Amandine, et al.
Publicado: (2015)

Locally acting transcription factors regulate p53-dependent cis-regulatory element activity
por: Catizone, Allison N, et al.
Publicado: (2020)

Architectural proteins CTCF and cohesin have distinct roles in modulating the higher order structure and expression of the CFTR locus
por: Gosalia, Nehal, et al.
Publicado: (2014)

Identification of the regulatory elements controlling the transmission stage-specific gene expression of PAD1 in Trypanosoma brucei
por: MacGregor, Paula, et al.
Publicado: (2012)

Identification of a novel distal regulatory element of the human Neuroglobin gene by the chromosome conformation capture approach
por: Tam, Kin Tung, et al.
Publicado: (2017)

Functional validation of mouse tyrosinase non-coding regulatory DNA elements by CRISPR–Cas9-mediated mutagenesis
por: Seruggia, Davide, et al.
Publicado: (2015)

RBPJ binds to consensus and methylated cis elements within phased nucleosomes and controls gene expression in human aortic smooth muscle cells in cooperation with SRF
por: Rozenberg, Julian M, et al.
Publicado: (2018)

Epstein–Barr virus transcription factor Zta acts through distal regulatory elements to directly control cellular gene expression
por: Ramasubramanyan, Sharada, et al.
Publicado: (2015)

Factor cooperation for chromosome discrimination in Drosophila
por: Albig, Christian, et al.
Publicado: (2019)

Retrograde BMP signaling activates neuronal gene expression through widespread deployment of a conserved BMP-responsive cis-regulatory activation element
por: Vuilleumier, Robin, et al.
Publicado: (2019)

Chromatin profiling across the human tumour necrosis factor gene locus reveals a complex, cell type-specific landscape with novel regulatory elements
por: Taylor, Jennifer M., et al.
Publicado: (2008)

Cooperative DNA looping by PRC2 complexes
por: Lin, Xingcheng, et al.
Publicado: (2021)

Dynamic changes in cis-regulatory occupancy by Six1 and its cooperative interactions with distinct cofactors drive lineage-specific gene expression programs during progressive differentiation of the auditory sensory epithelium
por: Li, Jun, et al.
Publicado: (2020)

Stra13/DEC1 and DEC2 inhibit sterol regulatory element binding protein-1c in a hypoxia-inducible factor-dependent mechanism
por: Choi, Su Mi, et al.
Publicado: (2008)

The BCL2 gene is regulated by a special AT-rich sequence binding protein 1-mediated long range chromosomal interaction between the promoter and the distal element located within the 3′-UTR
por: Gong, Feiran, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_osm5fe53p47qns2kf9tmdcett7