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The drug target genes show higher evolutionary conservation than non-target genes
Although evidence indicates that drug target genes share some common evolutionary features, there have been few studies analyzing evolutionary features of drug targets from an overall level. Therefore, we conducted an analysis which aimed to investigate the evolutionary characteristics of drug targe...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Impact Journals LLC
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4826257/ https://www.ncbi.nlm.nih.gov/pubmed/26716901 http://dx.doi.org/10.18632/oncotarget.6755 |
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author | Lv, Wenhua Xu, Yongdeng Guo, Yiying Yu, Ziqi Feng, Guanglong Liu, Panpan Luan, Meiwei Zhu, Hongjie Liu, Guiyou Zhang, Mingming Lv, Hongchao Duan, Lian Shang, Zhenwei Li, Jin Jiang, Yongshuai Zhang, Ruijie |
author_facet | Lv, Wenhua Xu, Yongdeng Guo, Yiying Yu, Ziqi Feng, Guanglong Liu, Panpan Luan, Meiwei Zhu, Hongjie Liu, Guiyou Zhang, Mingming Lv, Hongchao Duan, Lian Shang, Zhenwei Li, Jin Jiang, Yongshuai Zhang, Ruijie |
author_sort | Lv, Wenhua |
collection | PubMed |
description | Although evidence indicates that drug target genes share some common evolutionary features, there have been few studies analyzing evolutionary features of drug targets from an overall level. Therefore, we conducted an analysis which aimed to investigate the evolutionary characteristics of drug target genes. We compared the evolutionary conservation between human drug target genes and non-target genes by combining both the evolutionary features and network topological properties in human protein-protein interaction network. The evolution rate, conservation score and the percentage of orthologous genes of 21 species were included in our study. Meanwhile, four topological features including the average shortest path length, betweenness centrality, clustering coefficient and degree were considered for comparison analysis. Then we got four results as following: compared with non-drug target genes, 1) drug target genes had lower evolutionary rates; 2) drug target genes had higher conservation scores; 3) drug target genes had higher percentages of orthologous genes and 4) drug target genes had a tighter network structure including higher degrees, betweenness centrality, clustering coefficients and lower average shortest path lengths. These results demonstrate that drug target genes are more evolutionarily conserved than non-drug target genes. We hope that our study will provide valuable information for other researchers who are interested in evolutionary conservation of drug targets. |
format | Online Article Text |
id | pubmed-4826257 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | Impact Journals LLC |
record_format | MEDLINE/PubMed |
spelling | pubmed-48262572016-05-09 The drug target genes show higher evolutionary conservation than non-target genes Lv, Wenhua Xu, Yongdeng Guo, Yiying Yu, Ziqi Feng, Guanglong Liu, Panpan Luan, Meiwei Zhu, Hongjie Liu, Guiyou Zhang, Mingming Lv, Hongchao Duan, Lian Shang, Zhenwei Li, Jin Jiang, Yongshuai Zhang, Ruijie Oncotarget Research Paper Although evidence indicates that drug target genes share some common evolutionary features, there have been few studies analyzing evolutionary features of drug targets from an overall level. Therefore, we conducted an analysis which aimed to investigate the evolutionary characteristics of drug target genes. We compared the evolutionary conservation between human drug target genes and non-target genes by combining both the evolutionary features and network topological properties in human protein-protein interaction network. The evolution rate, conservation score and the percentage of orthologous genes of 21 species were included in our study. Meanwhile, four topological features including the average shortest path length, betweenness centrality, clustering coefficient and degree were considered for comparison analysis. Then we got four results as following: compared with non-drug target genes, 1) drug target genes had lower evolutionary rates; 2) drug target genes had higher conservation scores; 3) drug target genes had higher percentages of orthologous genes and 4) drug target genes had a tighter network structure including higher degrees, betweenness centrality, clustering coefficients and lower average shortest path lengths. These results demonstrate that drug target genes are more evolutionarily conserved than non-drug target genes. We hope that our study will provide valuable information for other researchers who are interested in evolutionary conservation of drug targets. Impact Journals LLC 2015-12-24 /pmc/articles/PMC4826257/ /pubmed/26716901 http://dx.doi.org/10.18632/oncotarget.6755 Text en Copyright: © 2016 Lv et al. http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Paper Lv, Wenhua Xu, Yongdeng Guo, Yiying Yu, Ziqi Feng, Guanglong Liu, Panpan Luan, Meiwei Zhu, Hongjie Liu, Guiyou Zhang, Mingming Lv, Hongchao Duan, Lian Shang, Zhenwei Li, Jin Jiang, Yongshuai Zhang, Ruijie The drug target genes show higher evolutionary conservation than non-target genes |
title | The drug target genes show higher evolutionary conservation than non-target genes |
title_full | The drug target genes show higher evolutionary conservation than non-target genes |
title_fullStr | The drug target genes show higher evolutionary conservation than non-target genes |
title_full_unstemmed | The drug target genes show higher evolutionary conservation than non-target genes |
title_short | The drug target genes show higher evolutionary conservation than non-target genes |
title_sort | drug target genes show higher evolutionary conservation than non-target genes |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4826257/ https://www.ncbi.nlm.nih.gov/pubmed/26716901 http://dx.doi.org/10.18632/oncotarget.6755 |
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