Cargando…

The drug target genes show higher evolutionary conservation than non-target genes

Although evidence indicates that drug target genes share some common evolutionary features, there have been few studies analyzing evolutionary features of drug targets from an overall level. Therefore, we conducted an analysis which aimed to investigate the evolutionary characteristics of drug targe...

Descripción completa

Detalles Bibliográficos
Autores principales: Lv, Wenhua, Xu, Yongdeng, Guo, Yiying, Yu, Ziqi, Feng, Guanglong, Liu, Panpan, Luan, Meiwei, Zhu, Hongjie, Liu, Guiyou, Zhang, Mingming, Lv, Hongchao, Duan, Lian, Shang, Zhenwei, Li, Jin, Jiang, Yongshuai, Zhang, Ruijie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Impact Journals LLC 2015
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4826257/
https://www.ncbi.nlm.nih.gov/pubmed/26716901
http://dx.doi.org/10.18632/oncotarget.6755
_version_ 1782426317579354112
author Lv, Wenhua
Xu, Yongdeng
Guo, Yiying
Yu, Ziqi
Feng, Guanglong
Liu, Panpan
Luan, Meiwei
Zhu, Hongjie
Liu, Guiyou
Zhang, Mingming
Lv, Hongchao
Duan, Lian
Shang, Zhenwei
Li, Jin
Jiang, Yongshuai
Zhang, Ruijie
author_facet Lv, Wenhua
Xu, Yongdeng
Guo, Yiying
Yu, Ziqi
Feng, Guanglong
Liu, Panpan
Luan, Meiwei
Zhu, Hongjie
Liu, Guiyou
Zhang, Mingming
Lv, Hongchao
Duan, Lian
Shang, Zhenwei
Li, Jin
Jiang, Yongshuai
Zhang, Ruijie
author_sort Lv, Wenhua
collection PubMed
description Although evidence indicates that drug target genes share some common evolutionary features, there have been few studies analyzing evolutionary features of drug targets from an overall level. Therefore, we conducted an analysis which aimed to investigate the evolutionary characteristics of drug target genes. We compared the evolutionary conservation between human drug target genes and non-target genes by combining both the evolutionary features and network topological properties in human protein-protein interaction network. The evolution rate, conservation score and the percentage of orthologous genes of 21 species were included in our study. Meanwhile, four topological features including the average shortest path length, betweenness centrality, clustering coefficient and degree were considered for comparison analysis. Then we got four results as following: compared with non-drug target genes, 1) drug target genes had lower evolutionary rates; 2) drug target genes had higher conservation scores; 3) drug target genes had higher percentages of orthologous genes and 4) drug target genes had a tighter network structure including higher degrees, betweenness centrality, clustering coefficients and lower average shortest path lengths. These results demonstrate that drug target genes are more evolutionarily conserved than non-drug target genes. We hope that our study will provide valuable information for other researchers who are interested in evolutionary conservation of drug targets.
format Online
Article
Text
id pubmed-4826257
institution National Center for Biotechnology Information
language English
publishDate 2015
publisher Impact Journals LLC
record_format MEDLINE/PubMed
spelling pubmed-48262572016-05-09 The drug target genes show higher evolutionary conservation than non-target genes Lv, Wenhua Xu, Yongdeng Guo, Yiying Yu, Ziqi Feng, Guanglong Liu, Panpan Luan, Meiwei Zhu, Hongjie Liu, Guiyou Zhang, Mingming Lv, Hongchao Duan, Lian Shang, Zhenwei Li, Jin Jiang, Yongshuai Zhang, Ruijie Oncotarget Research Paper Although evidence indicates that drug target genes share some common evolutionary features, there have been few studies analyzing evolutionary features of drug targets from an overall level. Therefore, we conducted an analysis which aimed to investigate the evolutionary characteristics of drug target genes. We compared the evolutionary conservation between human drug target genes and non-target genes by combining both the evolutionary features and network topological properties in human protein-protein interaction network. The evolution rate, conservation score and the percentage of orthologous genes of 21 species were included in our study. Meanwhile, four topological features including the average shortest path length, betweenness centrality, clustering coefficient and degree were considered for comparison analysis. Then we got four results as following: compared with non-drug target genes, 1) drug target genes had lower evolutionary rates; 2) drug target genes had higher conservation scores; 3) drug target genes had higher percentages of orthologous genes and 4) drug target genes had a tighter network structure including higher degrees, betweenness centrality, clustering coefficients and lower average shortest path lengths. These results demonstrate that drug target genes are more evolutionarily conserved than non-drug target genes. We hope that our study will provide valuable information for other researchers who are interested in evolutionary conservation of drug targets. Impact Journals LLC 2015-12-24 /pmc/articles/PMC4826257/ /pubmed/26716901 http://dx.doi.org/10.18632/oncotarget.6755 Text en Copyright: © 2016 Lv et al. http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Paper
Lv, Wenhua
Xu, Yongdeng
Guo, Yiying
Yu, Ziqi
Feng, Guanglong
Liu, Panpan
Luan, Meiwei
Zhu, Hongjie
Liu, Guiyou
Zhang, Mingming
Lv, Hongchao
Duan, Lian
Shang, Zhenwei
Li, Jin
Jiang, Yongshuai
Zhang, Ruijie
The drug target genes show higher evolutionary conservation than non-target genes
title The drug target genes show higher evolutionary conservation than non-target genes
title_full The drug target genes show higher evolutionary conservation than non-target genes
title_fullStr The drug target genes show higher evolutionary conservation than non-target genes
title_full_unstemmed The drug target genes show higher evolutionary conservation than non-target genes
title_short The drug target genes show higher evolutionary conservation than non-target genes
title_sort drug target genes show higher evolutionary conservation than non-target genes
topic Research Paper
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4826257/
https://www.ncbi.nlm.nih.gov/pubmed/26716901
http://dx.doi.org/10.18632/oncotarget.6755
work_keys_str_mv AT lvwenhua thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT xuyongdeng thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT guoyiying thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT yuziqi thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT fengguanglong thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT liupanpan thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT luanmeiwei thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT zhuhongjie thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT liuguiyou thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT zhangmingming thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT lvhongchao thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT duanlian thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT shangzhenwei thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT lijin thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT jiangyongshuai thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT zhangruijie thedrugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT lvwenhua drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT xuyongdeng drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT guoyiying drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT yuziqi drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT fengguanglong drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT liupanpan drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT luanmeiwei drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT zhuhongjie drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT liuguiyou drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT zhangmingming drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT lvhongchao drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT duanlian drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT shangzhenwei drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT lijin drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT jiangyongshuai drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes
AT zhangruijie drugtargetgenesshowhigherevolutionaryconservationthannontargetgenes