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Survival of the Curviest: Noise-Driven Selection for Synergistic Epistasis

A major goal of human genetics is to elucidate the genetic architecture of human disease, with the goal of fueling improvements in diagnosis and the understanding of disease pathogenesis. The degree to which epistasis, or non-additive effects of risk alleles at different loci, accounts for common di...

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Detalles Bibliográficos
Autores principales: Wilkins, Jon F., McHale, Peter T., Gervin, Joshua, Lander, Arthur D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4849581/
https://www.ncbi.nlm.nih.gov/pubmed/27123867
http://dx.doi.org/10.1371/journal.pgen.1006003
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author Wilkins, Jon F.
McHale, Peter T.
Gervin, Joshua
Lander, Arthur D.
author_facet Wilkins, Jon F.
McHale, Peter T.
Gervin, Joshua
Lander, Arthur D.
author_sort Wilkins, Jon F.
collection PubMed
description A major goal of human genetics is to elucidate the genetic architecture of human disease, with the goal of fueling improvements in diagnosis and the understanding of disease pathogenesis. The degree to which epistasis, or non-additive effects of risk alleles at different loci, accounts for common disease traits is hotly debated, in part because the conditions under which epistasis evolves are not well understood. Using both theory and evolutionary simulation, we show that the occurrence of common diseases (i.e. unfit phenotypes with frequencies on the order of 1%) can, under the right circumstances, be expected to be driven primarily by synergistic epistatic interactions. Conditions that are necessary, collectively, for this outcome include a strongly non-linear phenotypic landscape, strong (but not too strong) selection against the disease phenotype, and “noise” in the genotype-phenotype map that is both environmental (extrinsic, time-correlated) and developmental (intrinsic, uncorrelated) and, in both cases, neither too little nor too great. These results suggest ways in which geneticists might identify, a priori, those disease traits for which an “epistatic explanation” should be sought, and in the process better focus ongoing searches for risk alleles.
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spelling pubmed-48495812016-05-07 Survival of the Curviest: Noise-Driven Selection for Synergistic Epistasis Wilkins, Jon F. McHale, Peter T. Gervin, Joshua Lander, Arthur D. PLoS Genet Research Article A major goal of human genetics is to elucidate the genetic architecture of human disease, with the goal of fueling improvements in diagnosis and the understanding of disease pathogenesis. The degree to which epistasis, or non-additive effects of risk alleles at different loci, accounts for common disease traits is hotly debated, in part because the conditions under which epistasis evolves are not well understood. Using both theory and evolutionary simulation, we show that the occurrence of common diseases (i.e. unfit phenotypes with frequencies on the order of 1%) can, under the right circumstances, be expected to be driven primarily by synergistic epistatic interactions. Conditions that are necessary, collectively, for this outcome include a strongly non-linear phenotypic landscape, strong (but not too strong) selection against the disease phenotype, and “noise” in the genotype-phenotype map that is both environmental (extrinsic, time-correlated) and developmental (intrinsic, uncorrelated) and, in both cases, neither too little nor too great. These results suggest ways in which geneticists might identify, a priori, those disease traits for which an “epistatic explanation” should be sought, and in the process better focus ongoing searches for risk alleles. Public Library of Science 2016-04-28 /pmc/articles/PMC4849581/ /pubmed/27123867 http://dx.doi.org/10.1371/journal.pgen.1006003 Text en © 2016 Wilkins et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Wilkins, Jon F.
McHale, Peter T.
Gervin, Joshua
Lander, Arthur D.
Survival of the Curviest: Noise-Driven Selection for Synergistic Epistasis
title Survival of the Curviest: Noise-Driven Selection for Synergistic Epistasis
title_full Survival of the Curviest: Noise-Driven Selection for Synergistic Epistasis
title_fullStr Survival of the Curviest: Noise-Driven Selection for Synergistic Epistasis
title_full_unstemmed Survival of the Curviest: Noise-Driven Selection for Synergistic Epistasis
title_short Survival of the Curviest: Noise-Driven Selection for Synergistic Epistasis
title_sort survival of the curviest: noise-driven selection for synergistic epistasis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4849581/
https://www.ncbi.nlm.nih.gov/pubmed/27123867
http://dx.doi.org/10.1371/journal.pgen.1006003
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