Cargando…

IOTA: integration optimization, triage and analysis tool for the processing of XFEL diffraction images

Serial femtosecond crystallography (SFX) uses an X-ray free-electron laser to extract diffraction data from crystals not amenable to conventional X-ray light sources owing to their small size or radiation sensitivity. However, a limitation of SFX is the high variability of the diffraction images tha...

Descripción completa

Detalles Bibliográficos
Autores principales:	Lyubimov, Artem Y., Uervirojnangkoorn, Monarin, Zeldin, Oliver B., Brewster, Aaron S., Murray, Thomas D., Sauter, Nicholas K., Berger, James M., Weis, William I., Brunger, Axel T.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	International Union of Crystallography 2016
Materias:	Computer Programs
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4886991/ https://www.ncbi.nlm.nih.gov/pubmed/27275148 http://dx.doi.org/10.1107/S1600576716006683

Ejemplares similares

Advances in X-ray free electron laser (XFEL) diffraction data processing applied to the crystal structure of the synaptotagmin-1 / SNARE complex
por: Lyubimov, Artem Y, et al.
Publicado: (2016)

Data Exploration Toolkit for serial diffraction experiments
por: Zeldin, Oliver B., et al.
Publicado: (2015)

Enabling X-ray free electron laser crystallography for challenging biological systems from a limited number of crystals
por: Uervirojnangkoorn, Monarin, et al.
Publicado: (2015)

Resolving indexing ambiguities in X-ray free-electron laser diffraction patterns
por: Uervirojnangkoorn, Monarin, et al.
Publicado: (2019)

Capture and X-ray diffraction studies of protein microcrystals in a microfluidic trap array
por: Lyubimov, Artem Y., et al.
Publicado: (2015)

A high-transparency, micro-patternable chip for X-ray diffraction analysis of microcrystals under native growth conditions
por: Murray, Thomas D., et al.
Publicado: (2015)

dxtbx: the diffraction experiment toolbox
por: Parkhurst, James M., et al.
Publicado: (2014)

Mapping the conformational landscape of a dynamic enzyme by multitemperature and XFEL crystallography
por: Keedy, Daniel A, et al.
Publicado: (2015)

Architecture of the Synaptotagmin-SNARE Machinery for Neuronal Exocytosis
por: Zhou, Qiangjun, et al.
Publicado: (2015)

New tools for calibrating diffraction setups
por: Kieffer, J., et al.
Publicado: (2020)

XFEL diffraction: developing processing methods to optimize data quality
por: Sauter, Nicholas K.
Publicado: (2015)

GIDVis: a comprehensive software tool for geometry-independent grazing-incidence X-ray diffraction data analysis and pole-figure calculations
por: Schrode, Benedikt, et al.
Publicado: (2019)

DISEMM: a tool for the investigation of elasto-plastic behaviour on polycrystalline samples using X-ray and neutron diffraction
por: Heldmann, Alexander, et al.
Publicado: (2022)

xrd_simulator: 3D X-ray diffraction simulation software supporting 3D polycrystalline microstructure morphology descriptions
por: Henningsson, Axel, et al.
Publicado: (2023)

Crystallographic analysis of the lattice metric (CALM) from single electron backscatter diffraction or transmission Kikuchi diffraction patterns
por: Nolze, Gert, et al.
Publicado: (2021)

SAD phasing of XFEL data depends critically on the error model
por: Brewster, Aaron S., et al.
Publicado: (2019)

CADEM: calculate X-ray diffraction of epitaxial multilayers
por: Komar, Paulina, et al.
Publicado: (2017)

Towards the spatial resolution of metalloprotein charge states by detailed modeling of XFEL crystallographic diffraction
por: Sauter, Nicholas K., et al.
Publicado: (2020)

Automatic processing of macromolecular crystallography X-ray diffraction data at the ESRF
por: Monaco, Stéphanie, et al.
Publicado: (2013)

Improved crystal orientation and physical properties from single-shot XFEL stills
por: Sauter, Nicholas K., et al.
Publicado: (2014)

EDDIDAT: a graphical user interface for the analysis of energy-dispersive diffraction data
por: Apel, Daniel, et al.
Publicado: (2020)

GIDInd: an automated indexing software for grazing-incidence X-ray diffraction data
por: Kainz, Manuel Peter, et al.
Publicado: (2021)

Gwaihir: Jupyter Notebook graphical user interface for Bragg coherent diffraction imaging
por: Simonne, David, et al.
Publicado: (2022)

HAT: a high-energy surface X-ray diffraction analysis toolkit
por: Harlow, Gary S., et al.
Publicado: (2023)

CELLOPT: improved unit-cell parameters for electron diffraction data of small-molecule crystals
por: Gruene, Tim, et al.
Publicado: (2022)

BINoculars: data reduction and analysis software for two-dimensional detectors in surface X-ray diffraction
por: Roobol, Sander, et al.
Publicado: (2015)

Processing two-dimensional X-ray diffraction and small-angle scattering data in DAWN 2
por: Filik, J., et al.
Publicado: (2017)

ARPGE: a computer program to automatically reconstruct the parent grains from electron backscatter diffraction data
por: Cayron, Cyril
Publicado: (2007)

SUePDF: a program to obtain quantitative pair distribution functions from electron diffraction data
por: Tran, Dung Trung, et al.
Publicado: (2017)

Skopi: a simulation package for diffractive imaging of noncrystalline biomolecules
por: Peck, Ariana, et al.
Publicado: (2022)

The CCP13 FibreFix program suite: semi-automated analysis of diffraction patterns from non-crystalline materials
por: Rajkumar, Ganeshalingam, et al.
Publicado: (2007)

FXD-CSD-GUI: a graphical user interface for the X-ray-diffraction-based determination of crystallite size distributions
por: Neher, Sigmund H., et al.
Publicado: (2019)

Domain Auto Finder (DAFi) program: the analysis of single-crystal X-ray diffraction data from polycrystalline samples
por: Aslandukov, Andrey, et al.
Publicado: (2022)

Three-dimensional reconstruction for coherent diffraction patterns obtained by XFEL
por: Nakano, Miki, et al.
Publicado: (2017)

HiSPoD: a program for high-speed polychromatic X-ray diffraction experiments and data analysis on polycrystalline samples
por: Sun, Tao, et al.
Publicado: (2016)

Introduction to Python Dynamic Diffraction Toolkit (PyDDT): structural refinement of single crystals via X-ray phase measurements
por: Penacchio, Rafaela F. S., et al.
Publicado: (2023)

EDP2PDF: a computer program for extracting a pair distribution function from an electron diffraction pattern for the structural analysis of materials
por: Liu, Hongwei, et al.
Publicado: (2023)

Analysis of XFEL serial diffraction data from individual crystalline fibrils
por: Wojtas, David H., et al.
Publicado: (2017)

Crystallographic Tool Box (CrysTBox): automated tools for transmission electron microscopists and crystallographers
por: Klinger, Miloslav, et al.
Publicado: (2015)

Gently does it for submicron crystals
por: Zeldin, Oliver B, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_4ab0etf6kakgig84rjobm2r1h1