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Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs

Drug sensitivity and resistance are conventionally quantified by IC(50) or E(max) values, but these metrics are highly sensitive to the number of divisions taking place over the course of a response assay. The dependency of IC(50) and E(max) on division rate creates artefactual correlations between...

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Autores principales: Hafner, Marc, Niepel, Mario, Chung, Mirra, Sorger, Peter K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4887336/
https://www.ncbi.nlm.nih.gov/pubmed/27135972
http://dx.doi.org/10.1038/nmeth.3853
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author Hafner, Marc
Niepel, Mario
Chung, Mirra
Sorger, Peter K.
author_facet Hafner, Marc
Niepel, Mario
Chung, Mirra
Sorger, Peter K.
author_sort Hafner, Marc
collection PubMed
description Drug sensitivity and resistance are conventionally quantified by IC(50) or E(max) values, but these metrics are highly sensitive to the number of divisions taking place over the course of a response assay. The dependency of IC(50) and E(max) on division rate creates artefactual correlations between genotype and drug sensitivity while obscuring valuable biological insights and interfering with biomarker discovery. We derive alternative drug response metrics that are insensitive to division number. These are based on estimating the magnitude of drug-induced growth rate inhibition (GR) using endpoint or time-course assays. We show that GR(50) and GR(max) are superior to conventional metrics for assessing the effects of drugs in dividing cells. Moreover, adopting GR metrics requires only modest changes in experimental protocols. We expect GR metrics to improve the study of cell signaling and growth using drugs, discovery of drug response biomarkers, and identification of drugs effective on specific patient-derived tumor cells.
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spelling pubmed-48873362016-11-02 Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs Hafner, Marc Niepel, Mario Chung, Mirra Sorger, Peter K. Nat Methods Article Drug sensitivity and resistance are conventionally quantified by IC(50) or E(max) values, but these metrics are highly sensitive to the number of divisions taking place over the course of a response assay. The dependency of IC(50) and E(max) on division rate creates artefactual correlations between genotype and drug sensitivity while obscuring valuable biological insights and interfering with biomarker discovery. We derive alternative drug response metrics that are insensitive to division number. These are based on estimating the magnitude of drug-induced growth rate inhibition (GR) using endpoint or time-course assays. We show that GR(50) and GR(max) are superior to conventional metrics for assessing the effects of drugs in dividing cells. Moreover, adopting GR metrics requires only modest changes in experimental protocols. We expect GR metrics to improve the study of cell signaling and growth using drugs, discovery of drug response biomarkers, and identification of drugs effective on specific patient-derived tumor cells. 2016-05-02 2016-06 /pmc/articles/PMC4887336/ /pubmed/27135972 http://dx.doi.org/10.1038/nmeth.3853 Text en Users may view, print, copy, and download text and data-mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use:http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Hafner, Marc
Niepel, Mario
Chung, Mirra
Sorger, Peter K.
Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs
title Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs
title_full Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs
title_fullStr Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs
title_full_unstemmed Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs
title_short Growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs
title_sort growth rate inhibition metrics correct for confounders in measuring sensitivity to cancer drugs
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4887336/
https://www.ncbi.nlm.nih.gov/pubmed/27135972
http://dx.doi.org/10.1038/nmeth.3853
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