Cargando…
Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes
Ossification of the posterior longitudinal ligament of the spine (OPLL), which is characterized by ectopic bone formation in the spinal ligaments, can cause spinal-cord compression. To date, at least 11 susceptibility genes have been genetically linked to OPLL. In order to identify potential deleter...
Autores principales: | , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4887887/ https://www.ncbi.nlm.nih.gov/pubmed/27246988 http://dx.doi.org/10.1038/srep26962 |
_version_ | 1782434791644200960 |
---|---|
author | Chen, Xin Guo, Jun Cai, Tao Zhang, Fengshan Pan, Shengfa Zhang, Li Wang, Shaobo Zhou, Feifei Diao, Yinze Zhao, Yanbin Chen, Zhen Liu, Xiaoguang Chen, Zhongqiang Liu, Zhongjun Sun, Yu Du, Jie |
author_facet | Chen, Xin Guo, Jun Cai, Tao Zhang, Fengshan Pan, Shengfa Zhang, Li Wang, Shaobo Zhou, Feifei Diao, Yinze Zhao, Yanbin Chen, Zhen Liu, Xiaoguang Chen, Zhongqiang Liu, Zhongjun Sun, Yu Du, Jie |
author_sort | Chen, Xin |
collection | PubMed |
description | Ossification of the posterior longitudinal ligament of the spine (OPLL), which is characterized by ectopic bone formation in the spinal ligaments, can cause spinal-cord compression. To date, at least 11 susceptibility genes have been genetically linked to OPLL. In order to identify potential deleterious alleles in these OPLL-associated genes, we designed a capture array encompassing all coding regions of the target genes for next-generation sequencing (NGS) in a cohort of 55 unrelated patients with OPLL. By bioinformatics analyses, we successfully identified three novel and five extremely rare variants (MAF < 0.005). These variants were predicted to be deleterious by commonly used various algorithms, thereby resulting in missense mutations in four OPLL-associated genes (i.e., COL6A1, COL11A2, FGFR1, and BMP2). Furthermore, potential effects of the patient with p.Q89E of BMP2 were confirmed by a markedly increased BMP2 level in peripheral blood samples. Notably, seven of the variants were found to be associated with the patients with continuous subtype changes by cervical spinal radiological analyses. Taken together, our findings revealed for the first time that deleterious coding variants of the four OPLL-associated genes are potentially pathogenic in the patients with OPLL. |
format | Online Article Text |
id | pubmed-4887887 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-48878872016-06-09 Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes Chen, Xin Guo, Jun Cai, Tao Zhang, Fengshan Pan, Shengfa Zhang, Li Wang, Shaobo Zhou, Feifei Diao, Yinze Zhao, Yanbin Chen, Zhen Liu, Xiaoguang Chen, Zhongqiang Liu, Zhongjun Sun, Yu Du, Jie Sci Rep Article Ossification of the posterior longitudinal ligament of the spine (OPLL), which is characterized by ectopic bone formation in the spinal ligaments, can cause spinal-cord compression. To date, at least 11 susceptibility genes have been genetically linked to OPLL. In order to identify potential deleterious alleles in these OPLL-associated genes, we designed a capture array encompassing all coding regions of the target genes for next-generation sequencing (NGS) in a cohort of 55 unrelated patients with OPLL. By bioinformatics analyses, we successfully identified three novel and five extremely rare variants (MAF < 0.005). These variants were predicted to be deleterious by commonly used various algorithms, thereby resulting in missense mutations in four OPLL-associated genes (i.e., COL6A1, COL11A2, FGFR1, and BMP2). Furthermore, potential effects of the patient with p.Q89E of BMP2 were confirmed by a markedly increased BMP2 level in peripheral blood samples. Notably, seven of the variants were found to be associated with the patients with continuous subtype changes by cervical spinal radiological analyses. Taken together, our findings revealed for the first time that deleterious coding variants of the four OPLL-associated genes are potentially pathogenic in the patients with OPLL. Nature Publishing Group 2016-06-01 /pmc/articles/PMC4887887/ /pubmed/27246988 http://dx.doi.org/10.1038/srep26962 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ |
spellingShingle | Article Chen, Xin Guo, Jun Cai, Tao Zhang, Fengshan Pan, Shengfa Zhang, Li Wang, Shaobo Zhou, Feifei Diao, Yinze Zhao, Yanbin Chen, Zhen Liu, Xiaoguang Chen, Zhongqiang Liu, Zhongjun Sun, Yu Du, Jie Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes |
title | Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes |
title_full | Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes |
title_fullStr | Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes |
title_full_unstemmed | Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes |
title_short | Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes |
title_sort | targeted next-generation sequencing reveals multiple deleterious variants in opll-associated genes |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4887887/ https://www.ncbi.nlm.nih.gov/pubmed/27246988 http://dx.doi.org/10.1038/srep26962 |
work_keys_str_mv | AT chenxin targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT guojun targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT caitao targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT zhangfengshan targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT panshengfa targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT zhangli targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT wangshaobo targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT zhoufeifei targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT diaoyinze targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT zhaoyanbin targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT chenzhen targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT liuxiaoguang targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT chenzhongqiang targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT liuzhongjun targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT sunyu targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes AT dujie targetednextgenerationsequencingrevealsmultipledeleteriousvariantsinopllassociatedgenes |