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Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes

Ossification of the posterior longitudinal ligament of the spine (OPLL), which is characterized by ectopic bone formation in the spinal ligaments, can cause spinal-cord compression. To date, at least 11 susceptibility genes have been genetically linked to OPLL. In order to identify potential deleter...

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Autores principales: Chen, Xin, Guo, Jun, Cai, Tao, Zhang, Fengshan, Pan, Shengfa, Zhang, Li, Wang, Shaobo, Zhou, Feifei, Diao, Yinze, Zhao, Yanbin, Chen, Zhen, Liu, Xiaoguang, Chen, Zhongqiang, Liu, Zhongjun, Sun, Yu, Du, Jie
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4887887/
https://www.ncbi.nlm.nih.gov/pubmed/27246988
http://dx.doi.org/10.1038/srep26962
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author Chen, Xin
Guo, Jun
Cai, Tao
Zhang, Fengshan
Pan, Shengfa
Zhang, Li
Wang, Shaobo
Zhou, Feifei
Diao, Yinze
Zhao, Yanbin
Chen, Zhen
Liu, Xiaoguang
Chen, Zhongqiang
Liu, Zhongjun
Sun, Yu
Du, Jie
author_facet Chen, Xin
Guo, Jun
Cai, Tao
Zhang, Fengshan
Pan, Shengfa
Zhang, Li
Wang, Shaobo
Zhou, Feifei
Diao, Yinze
Zhao, Yanbin
Chen, Zhen
Liu, Xiaoguang
Chen, Zhongqiang
Liu, Zhongjun
Sun, Yu
Du, Jie
author_sort Chen, Xin
collection PubMed
description Ossification of the posterior longitudinal ligament of the spine (OPLL), which is characterized by ectopic bone formation in the spinal ligaments, can cause spinal-cord compression. To date, at least 11 susceptibility genes have been genetically linked to OPLL. In order to identify potential deleterious alleles in these OPLL-associated genes, we designed a capture array encompassing all coding regions of the target genes for next-generation sequencing (NGS) in a cohort of 55 unrelated patients with OPLL. By bioinformatics analyses, we successfully identified three novel and five extremely rare variants (MAF < 0.005). These variants were predicted to be deleterious by commonly used various algorithms, thereby resulting in missense mutations in four OPLL-associated genes (i.e., COL6A1, COL11A2, FGFR1, and BMP2). Furthermore, potential effects of the patient with p.Q89E of BMP2 were confirmed by a markedly increased BMP2 level in peripheral blood samples. Notably, seven of the variants were found to be associated with the patients with continuous subtype changes by cervical spinal radiological analyses. Taken together, our findings revealed for the first time that deleterious coding variants of the four OPLL-associated genes are potentially pathogenic in the patients with OPLL.
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spelling pubmed-48878872016-06-09 Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes Chen, Xin Guo, Jun Cai, Tao Zhang, Fengshan Pan, Shengfa Zhang, Li Wang, Shaobo Zhou, Feifei Diao, Yinze Zhao, Yanbin Chen, Zhen Liu, Xiaoguang Chen, Zhongqiang Liu, Zhongjun Sun, Yu Du, Jie Sci Rep Article Ossification of the posterior longitudinal ligament of the spine (OPLL), which is characterized by ectopic bone formation in the spinal ligaments, can cause spinal-cord compression. To date, at least 11 susceptibility genes have been genetically linked to OPLL. In order to identify potential deleterious alleles in these OPLL-associated genes, we designed a capture array encompassing all coding regions of the target genes for next-generation sequencing (NGS) in a cohort of 55 unrelated patients with OPLL. By bioinformatics analyses, we successfully identified three novel and five extremely rare variants (MAF < 0.005). These variants were predicted to be deleterious by commonly used various algorithms, thereby resulting in missense mutations in four OPLL-associated genes (i.e., COL6A1, COL11A2, FGFR1, and BMP2). Furthermore, potential effects of the patient with p.Q89E of BMP2 were confirmed by a markedly increased BMP2 level in peripheral blood samples. Notably, seven of the variants were found to be associated with the patients with continuous subtype changes by cervical spinal radiological analyses. Taken together, our findings revealed for the first time that deleterious coding variants of the four OPLL-associated genes are potentially pathogenic in the patients with OPLL. Nature Publishing Group 2016-06-01 /pmc/articles/PMC4887887/ /pubmed/27246988 http://dx.doi.org/10.1038/srep26962 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Chen, Xin
Guo, Jun
Cai, Tao
Zhang, Fengshan
Pan, Shengfa
Zhang, Li
Wang, Shaobo
Zhou, Feifei
Diao, Yinze
Zhao, Yanbin
Chen, Zhen
Liu, Xiaoguang
Chen, Zhongqiang
Liu, Zhongjun
Sun, Yu
Du, Jie
Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes
title Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes
title_full Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes
title_fullStr Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes
title_full_unstemmed Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes
title_short Targeted next-generation sequencing reveals multiple deleterious variants in OPLL-associated genes
title_sort targeted next-generation sequencing reveals multiple deleterious variants in opll-associated genes
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4887887/
https://www.ncbi.nlm.nih.gov/pubmed/27246988
http://dx.doi.org/10.1038/srep26962
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