Cargando…

Evaluation of rate law approximations in bottom-up kinetic models of metabolism

BACKGROUND: The mechanistic description of enzyme kinetics in a dynamic model of metabolism requires specifying the numerical values of a large number of kinetic parameters. The parameterization challenge is often addressed through the use of simplifying approximations to form reaction rate laws wit...

Descripción completa

Detalles Bibliográficos
Autores principales:	Du, Bin, Zielinski, Daniel C., Kavvas, Erol S., Dräger, Andreas, Tan, Justin, Zhang, Zhen, Ruggiero, Kayla E., Arzumanyan, Garri A., Palsson, Bernhard O.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4895898/ https://www.ncbi.nlm.nih.gov/pubmed/27266508 http://dx.doi.org/10.1186/s12918-016-0283-2

Ejemplares similares

Machine learning with random subspace ensembles identifies antimicrobial resistance determinants from pan-genomes of three pathogens
por: Hyun, Jason C., et al.
Publicado: (2020)

SBMLsqueezer 2: context-sensitive creation of kinetic equations in biochemical networks
por: Dräger, Andreas, et al.
Publicado: (2015)

Systems Biology and Pangenome of Salmonella O-Antigens
por: Seif, Yara, et al.
Publicado: (2019)

A biochemically-interpretable machine learning classifier for microbial GWAS
por: Kavvas, Erol S., et al.
Publicado: (2020)

iCN718, an Updated and Improved Genome-Scale Metabolic Network Reconstruction of Acinetobacter baumannii AYE
por: Norsigian, Charles J., et al.
Publicado: (2018)

Topological and kinetic determinants of the modal matrices of dynamic models of metabolism
por: Du, Bin, et al.
Publicado: (2017)

Exploring the rate-limiting steps in visual phototransduction recovery by bottom-up kinetic modeling
por: Invergo, Brandon M, et al.
Publicado: (2013)

Independent component analysis recovers consistent regulatory signals from disparate datasets
por: Sastry, Anand V., et al.
Publicado: (2021)

The Staphylococcus aureus Two-Component System AgrAC Displays Four Distinct Genomic Arrangements That Delineate Genomic Virulence Factor Signatures
por: Choudhary, Kumari S., et al.
Publicado: (2018)

Escherichia coli B2 strains prevalent in inflammatory bowel disease patients have distinct metabolic capabilities that enable colonization of intestinal mucosa
por: Fang, Xin, et al.
Publicado: (2018)

Approximate Scaling Laws For Beam Loading
por: Hutton, A M
Publicado: (1978)

Numerical approximation of hyperbolic systems of conservation laws
por: Godlewski, Edwige, et al.
Publicado: (1996)

Updated and standardized genome-scale reconstruction of Mycobacterium tuberculosis H37Rv, iEK1011, simulates flux states indicative of physiological conditions
por: Kavvas, Erol S., et al.
Publicado: (2018)

Improving Collaboration by Standardization Efforts in Systems Biology
por: Dräger, Andreas, et al.
Publicado: (2014)

Approximations of Cumulants of the Stochastic Power Law Logistic Model
por: Nåsell, Ingemar
Publicado: (2020)

MASSpy: Building, simulating, and visualizing dynamic biological models in Python using mass action kinetics
por: Haiman, Zachary B., et al.
Publicado: (2021)

Modeling genome-wide enzyme evolution predicts strong epistasis underlying catalytic turnover rates
por: Heckmann, David, et al.
Publicado: (2018)

Bottoms up! : a pathologist's essays on medicine and the humanities /
por: Ober, William B., 1920-

The bottom-up approach to supersymmetry
por: Zichichi, Antonino
Publicado: (1994)

Macroeconomics from the bottom-up /
Publicado: (2011)

Genome-scale metabolic reconstructions of multiple Salmonella strains reveal serovar-specific metabolic traits
por: Seif, Yara, et al.
Publicado: (2018)

Bottom-Up Kinetic Chain in Drop Landing among University Athletes with Normal Dynamic Knee Valgus
por: Jamaludin, Nazatul Izzati, et al.
Publicado: (2020)

Bottom-Up Strategy to Forecast the Drug Location and Release Kinetics in Antitumoral Electrospun Drug Delivery Systems
por: Longo, Raffaele, et al.
Publicado: (2023)

Laws of Large Numbers and Langevin Approximations for Stochastic Neural Field Equations
por: Riedler, Martin G, et al.
Publicado: (2013)

Machine learning and structural analysis of Mycobacterium tuberculosis pan-genome identifies genetic signatures of antibiotic resistance
por: Kavvas, Erol S., et al.
Publicado: (2018)

Warming assessment of the bottom-up Paris Agreement emissions pledges
por: Robiou du Pont, Yann, et al.
Publicado: (2018)

Bottom-up approach and supersymmetry breaking
por: Carena, M S, et al.
Publicado: (1996)

Investigating bottom-up auditory attention
por: Kaya, Emine Merve, et al.
Publicado: (2014)

Bottom-up assembly of metallic germanium
por: Scappucci, Giordano, et al.
Publicado: (2015)

Bottom-up Assembly of the Phytochrome Network
por: Sánchez-Lamas, Maximiliano, et al.
Publicado: (2016)

Approximate maximum likelihood estimation for stochastic chemical kinetics
por: Andreychenko, Aleksandr, et al.
Publicado: (2012)

Formulating genome-scale kinetic models in the post-genome era
por: Jamshidi, Neema, et al.
Publicado: (2008)

Experimental Evolution Reveals Unifying Systems-Level Adaptations but Diversity in Driving Genotypes
por: Kavvas, Erol S., et al.
Publicado: (2022)

THE KINETICS OF ENZYME REACTIONS: SCHÜTZ'S LAW
por: Moelwyn-Hughes, E. A., et al.
Publicado: (1930)

Bottoms Up: A History of Rectal Nutrition From 1870 to 1920
por: Barr, Justin, et al.
Publicado: (2021)

SBMLsqueezer: A CellDesigner plug-in to generate kinetic rate equations for biochemical networks
por: Dräger, Andreas, et al.
Publicado: (2008)

Approximate Solution for Electroosmotic Flow of Power-Law Fluids in a Planar Microchannel with Asymmetric Electrochemical Boundary Conditions
por: Choi, WooSeok, et al.
Publicado: (2018)

Life: sustainable, programmable, bottom-up manufacturing
por: Hessel, Andrew
Publicado: (2015)

Electroweak symmetry breaking: the bottom-up approach
por: Kilian, Wolfgang
Publicado: (2003)

Milk Bottom-Up Proteomics: Method Optimization
por: Vincent, Delphine, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_klfmekv2roc8slm1ce3739d52c