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The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes

Cancer is special among genetic disorders in two major ways: first, cancer is a disease of the most basic of cellular functions, such as cell proliferation, differentiation, and the maintenance of genomic integrity. Second, in contrast to most genetic disorders that are mediated by germline (heredit...

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Autores principales: Ostrow, Sheli L., Hershberg, Ruth
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898816/
https://www.ncbi.nlm.nih.gov/pubmed/27190005
http://dx.doi.org/10.1093/gbe/evw110
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author Ostrow, Sheli L.
Hershberg, Ruth
author_facet Ostrow, Sheli L.
Hershberg, Ruth
author_sort Ostrow, Sheli L.
collection PubMed
description Cancer is special among genetic disorders in two major ways: first, cancer is a disease of the most basic of cellular functions, such as cell proliferation, differentiation, and the maintenance of genomic integrity. Second, in contrast to most genetic disorders that are mediated by germline (hereditary) mutations, cancer is largely a somatic disease. Here we show that these two traits are not detached and that it is the somatic nature of cancer that allows it to affect the most basic of cellular functions. We begin by demonstrating that cancer genes are both more functionally central (as measured by their patterns of expression and protein interaction) and more evolutionarily constrained than non-cancer genetic disease genes. We then compare genes that are only modified somatically in cancer (hereinafter referred to as “somatic cancer genes”) to those that can also be modified in a hereditary manner, contributing to cancer development (hereinafter referred to as “hereditary cancer genes”). We show that both somatic and hereditary cancer genes are much more functionally central than genes contributing to non-cancer genetic disorders. At the same time, hereditary cancer genes are only as constrained as non-cancer hereditary disease genes, while somatic cancer genes tend to be much more constrained in evolution. Thus, it appears that it is the somatic nature of cancer that allows it to modify the most constrained genes and, therefore, affect the most basic of cellular functions.
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spelling pubmed-48988162016-06-10 The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes Ostrow, Sheli L. Hershberg, Ruth Genome Biol Evol Research Article Cancer is special among genetic disorders in two major ways: first, cancer is a disease of the most basic of cellular functions, such as cell proliferation, differentiation, and the maintenance of genomic integrity. Second, in contrast to most genetic disorders that are mediated by germline (hereditary) mutations, cancer is largely a somatic disease. Here we show that these two traits are not detached and that it is the somatic nature of cancer that allows it to affect the most basic of cellular functions. We begin by demonstrating that cancer genes are both more functionally central (as measured by their patterns of expression and protein interaction) and more evolutionarily constrained than non-cancer genetic disease genes. We then compare genes that are only modified somatically in cancer (hereinafter referred to as “somatic cancer genes”) to those that can also be modified in a hereditary manner, contributing to cancer development (hereinafter referred to as “hereditary cancer genes”). We show that both somatic and hereditary cancer genes are much more functionally central than genes contributing to non-cancer genetic disorders. At the same time, hereditary cancer genes are only as constrained as non-cancer hereditary disease genes, while somatic cancer genes tend to be much more constrained in evolution. Thus, it appears that it is the somatic nature of cancer that allows it to modify the most constrained genes and, therefore, affect the most basic of cellular functions. Oxford University Press 2016-05-10 /pmc/articles/PMC4898816/ /pubmed/27190005 http://dx.doi.org/10.1093/gbe/evw110 Text en © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Research Article
Ostrow, Sheli L.
Hershberg, Ruth
The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes
title The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes
title_full The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes
title_fullStr The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes
title_full_unstemmed The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes
title_short The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes
title_sort somatic nature of cancer allows it to affect highly constrained genes
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898816/
https://www.ncbi.nlm.nih.gov/pubmed/27190005
http://dx.doi.org/10.1093/gbe/evw110
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