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The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes
Cancer is special among genetic disorders in two major ways: first, cancer is a disease of the most basic of cellular functions, such as cell proliferation, differentiation, and the maintenance of genomic integrity. Second, in contrast to most genetic disorders that are mediated by germline (heredit...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2016
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898816/ https://www.ncbi.nlm.nih.gov/pubmed/27190005 http://dx.doi.org/10.1093/gbe/evw110 |
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author | Ostrow, Sheli L. Hershberg, Ruth |
author_facet | Ostrow, Sheli L. Hershberg, Ruth |
author_sort | Ostrow, Sheli L. |
collection | PubMed |
description | Cancer is special among genetic disorders in two major ways: first, cancer is a disease of the most basic of cellular functions, such as cell proliferation, differentiation, and the maintenance of genomic integrity. Second, in contrast to most genetic disorders that are mediated by germline (hereditary) mutations, cancer is largely a somatic disease. Here we show that these two traits are not detached and that it is the somatic nature of cancer that allows it to affect the most basic of cellular functions. We begin by demonstrating that cancer genes are both more functionally central (as measured by their patterns of expression and protein interaction) and more evolutionarily constrained than non-cancer genetic disease genes. We then compare genes that are only modified somatically in cancer (hereinafter referred to as “somatic cancer genes”) to those that can also be modified in a hereditary manner, contributing to cancer development (hereinafter referred to as “hereditary cancer genes”). We show that both somatic and hereditary cancer genes are much more functionally central than genes contributing to non-cancer genetic disorders. At the same time, hereditary cancer genes are only as constrained as non-cancer hereditary disease genes, while somatic cancer genes tend to be much more constrained in evolution. Thus, it appears that it is the somatic nature of cancer that allows it to modify the most constrained genes and, therefore, affect the most basic of cellular functions. |
format | Online Article Text |
id | pubmed-4898816 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2016 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-48988162016-06-10 The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes Ostrow, Sheli L. Hershberg, Ruth Genome Biol Evol Research Article Cancer is special among genetic disorders in two major ways: first, cancer is a disease of the most basic of cellular functions, such as cell proliferation, differentiation, and the maintenance of genomic integrity. Second, in contrast to most genetic disorders that are mediated by germline (hereditary) mutations, cancer is largely a somatic disease. Here we show that these two traits are not detached and that it is the somatic nature of cancer that allows it to affect the most basic of cellular functions. We begin by demonstrating that cancer genes are both more functionally central (as measured by their patterns of expression and protein interaction) and more evolutionarily constrained than non-cancer genetic disease genes. We then compare genes that are only modified somatically in cancer (hereinafter referred to as “somatic cancer genes”) to those that can also be modified in a hereditary manner, contributing to cancer development (hereinafter referred to as “hereditary cancer genes”). We show that both somatic and hereditary cancer genes are much more functionally central than genes contributing to non-cancer genetic disorders. At the same time, hereditary cancer genes are only as constrained as non-cancer hereditary disease genes, while somatic cancer genes tend to be much more constrained in evolution. Thus, it appears that it is the somatic nature of cancer that allows it to modify the most constrained genes and, therefore, affect the most basic of cellular functions. Oxford University Press 2016-05-10 /pmc/articles/PMC4898816/ /pubmed/27190005 http://dx.doi.org/10.1093/gbe/evw110 Text en © The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Research Article Ostrow, Sheli L. Hershberg, Ruth The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes |
title | The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes |
title_full | The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes |
title_fullStr | The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes |
title_full_unstemmed | The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes |
title_short | The Somatic Nature of Cancer Allows It to Affect Highly Constrained Genes |
title_sort | somatic nature of cancer allows it to affect highly constrained genes |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4898816/ https://www.ncbi.nlm.nih.gov/pubmed/27190005 http://dx.doi.org/10.1093/gbe/evw110 |
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