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Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models?

Cardiac electrophysiology models have been developed for over 50 years, and now include detailed descriptions of individual ion currents and sub-cellular calcium handling. It is commonly accepted that there are many uncertainties in these systems, with quantities such as ion channel kinetics or expr...

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Autores principales: Johnstone, Ross H., Chang, Eugene T.Y., Bardenet, Rémi, de Boer, Teun P., Gavaghan, David J., Pathmanathan, Pras, Clayton, Richard H., Mirams, Gary R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Academic Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915860/
https://www.ncbi.nlm.nih.gov/pubmed/26611884
http://dx.doi.org/10.1016/j.yjmcc.2015.11.018
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author Johnstone, Ross H.
Chang, Eugene T.Y.
Bardenet, Rémi
de Boer, Teun P.
Gavaghan, David J.
Pathmanathan, Pras
Clayton, Richard H.
Mirams, Gary R.
author_facet Johnstone, Ross H.
Chang, Eugene T.Y.
Bardenet, Rémi
de Boer, Teun P.
Gavaghan, David J.
Pathmanathan, Pras
Clayton, Richard H.
Mirams, Gary R.
author_sort Johnstone, Ross H.
collection PubMed
description Cardiac electrophysiology models have been developed for over 50 years, and now include detailed descriptions of individual ion currents and sub-cellular calcium handling. It is commonly accepted that there are many uncertainties in these systems, with quantities such as ion channel kinetics or expression levels being difficult to measure or variable between samples. Until recently, the original approach of describing model parameters using single values has been retained, and consequently the majority of mathematical models in use today provide point predictions, with no associated uncertainty. In recent years, statistical techniques have been developed and applied in many scientific areas to capture uncertainties in the quantities that determine model behaviour, and to provide a distribution of predictions which accounts for this uncertainty. In this paper we discuss this concept, which is termed uncertainty quantification, and consider how it might be applied to cardiac electrophysiology models. We present two case studies in which probability distributions, instead of individual numbers, are inferred from data to describe quantities such as maximal current densities. Then we show how these probabilistic representations of model parameters enable probabilities to be placed on predicted behaviours. We demonstrate how changes in these probability distributions across data sets offer insight into which currents cause beat-to-beat variability in canine APs. We conclude with a discussion of the challenges that this approach entails, and how it provides opportunities to improve our understanding of electrophysiology.
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spelling pubmed-49158602016-07-01 Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models? Johnstone, Ross H. Chang, Eugene T.Y. Bardenet, Rémi de Boer, Teun P. Gavaghan, David J. Pathmanathan, Pras Clayton, Richard H. Mirams, Gary R. J Mol Cell Cardiol Article Cardiac electrophysiology models have been developed for over 50 years, and now include detailed descriptions of individual ion currents and sub-cellular calcium handling. It is commonly accepted that there are many uncertainties in these systems, with quantities such as ion channel kinetics or expression levels being difficult to measure or variable between samples. Until recently, the original approach of describing model parameters using single values has been retained, and consequently the majority of mathematical models in use today provide point predictions, with no associated uncertainty. In recent years, statistical techniques have been developed and applied in many scientific areas to capture uncertainties in the quantities that determine model behaviour, and to provide a distribution of predictions which accounts for this uncertainty. In this paper we discuss this concept, which is termed uncertainty quantification, and consider how it might be applied to cardiac electrophysiology models. We present two case studies in which probability distributions, instead of individual numbers, are inferred from data to describe quantities such as maximal current densities. Then we show how these probabilistic representations of model parameters enable probabilities to be placed on predicted behaviours. We demonstrate how changes in these probability distributions across data sets offer insight into which currents cause beat-to-beat variability in canine APs. We conclude with a discussion of the challenges that this approach entails, and how it provides opportunities to improve our understanding of electrophysiology. Academic Press 2016-07 /pmc/articles/PMC4915860/ /pubmed/26611884 http://dx.doi.org/10.1016/j.yjmcc.2015.11.018 Text en © 2015 The Authors http://creativecommons.org/licenses/by/4.0/ This is an open access article under the CC BY license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Johnstone, Ross H.
Chang, Eugene T.Y.
Bardenet, Rémi
de Boer, Teun P.
Gavaghan, David J.
Pathmanathan, Pras
Clayton, Richard H.
Mirams, Gary R.
Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models?
title Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models?
title_full Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models?
title_fullStr Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models?
title_full_unstemmed Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models?
title_short Uncertainty and variability in models of the cardiac action potential: Can we build trustworthy models?
title_sort uncertainty and variability in models of the cardiac action potential: can we build trustworthy models?
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4915860/
https://www.ncbi.nlm.nih.gov/pubmed/26611884
http://dx.doi.org/10.1016/j.yjmcc.2015.11.018
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