Cargando…

A next generation sequencing-based method to study the intra-host genetic diversity of norovirus in patients with acute and chronic infection

BACKGROUND: Immunocompromised individuals with chronic norovirus (NoV) infection and elderly patients are hypothesized to be reservoirs where NoV might accumulate mutations and evolve into pandemic strains. Next generation sequencing (NGS) methods can monitor the intra-host diversity of NoV and its...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hasing, Maria E., Hazes, Bart, Lee, Bonita E., Preiksaitis, Jutta K., Pang, Xiaoli L.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4929757/ https://www.ncbi.nlm.nih.gov/pubmed/27363999 http://dx.doi.org/10.1186/s12864-016-2831-y

Ejemplares similares

Influence of Novel Norovirus GII.4 Variants on Gastroenteritis Outbreak Dynamics in Alberta and the Northern Territories, Canada between 2000 and 2008
por: Pang, Xiaoli L., et al.
Publicado: (2010)

Changes in norovirus genotype diversity in gastroenteritis outbreaks in Alberta, Canada: 2012–2018
por: Hasing, Maria E., et al.
Publicado: (2019)

Analysis of intra-host genetic diversity of Prunus necrotic ringspot virus (PNRSV) using amplicon next generation sequencing
por: Kinoti, Wycliff M., et al.
Publicado: (2017)

High Genetic Variability of Norovirus Leads to Diagnostic Test Challenges
por: Pang, Xiaoli, et al.
Publicado: (2017)

Characterization of intra- and inter-host norovirus P2 genetic variability in linked individuals by amplicon sequencing
por: Sabrià, Aurora, et al.
Publicado: (2018)

Correction: Characterization of intra- and inter-host norovirus P2 genetic variability in linked individuals by amplicon sequencing
por: Sabrià, Aurora, et al.
Publicado: (2018)

Next-generation sequencing reveals large connected networks of intra-host HCV variants
por: Campo, David S, et al.
Publicado: (2014)

Characterization of Within-Host Plasmodium falciparum Diversity Using Next-Generation Sequence Data
por: Auburn, Sarah, et al.
Publicado: (2012)

Genetic diversity and recombination of murine noroviruses in immunocompromised mice
por: Müller, B., et al.
Publicado: (2007)

A universal primer-independent next-generation sequencing approach for investigations of norovirus outbreaks and novel variants
por: Fonager, Jannik, et al.
Publicado: (2017)

Characterization of Norovirus and Other Human Enteric Viruses in Sewage and Stool Samples Through Next-Generation Sequencing
por: Strubbia, Sofia, et al.
Publicado: (2019)

Multiple Novel Human Norovirus Recombinants Identified in Wastewater in Pretoria, South Africa by Next-Generation Sequencing
por: Mabasa, Victor Vusi, et al.
Publicado: (2022)

DIAL: A Platform for real-time Laboratory Surveillance
por: Mukhi, Shamir N, et al.
Publicado: (2010)

Estimating HIV-1 Genetic Diversity in Brazil Through Next-Generation Sequencing
por: Alves, Brunna M., et al.
Publicado: (2019)

Inter- and Intra-Host Nucleotide Variations in Hepatitis A Virus in Culture and Clinical Samples Detected by Next-Generation Sequencing
por: Yang, Zhihui, et al.
Publicado: (2018)

Next Generation Sequencing Reveals the Hidden Diversity of Zooplankton Assemblages
por: Lindeque, Penelope K., et al.
Publicado: (2013)

Challenges and opportunities in estimating viral genetic diversity from next-generation sequencing data
por: Beerenwinkel, Niko, et al.
Publicado: (2012)

Analysis of the genetic diversity of influenza A viruses using next-generation DNA sequencing
por: Van den Hoecke, Silvie, et al.
Publicado: (2015)

Investigating intra-host and intra-herd sequence diversity of foot-and-mouth disease virus()
por: King, David J., et al.
Publicado: (2016)

Library Preparation Based on Transposase Assisted RNA/DNA Hybrid Co-Tagmentation for Next-Generation Sequencing of Human Noroviruses
por: Zhang, Zilei, et al.
Publicado: (2021)

Next Generation Sequencing to Define Prokaryotic and Fungal Diversity in the Bovine Rumen
por: Fouts, Derrick E., et al.
Publicado: (2012)

Viral intra-host evolution in immunocompetent children contributes to human norovirus diversification at the global scale
por: Tohma, Kentaro, et al.
Publicado: (2021)

Significantly Longer Shedding of Norovirus Compared to Rotavirus and Adenovirus in Children with Acute Gastroenteritis
por: Qiu, Yuanyuan, et al.
Publicado: (2023)

Using Next Generation Sequencing to Study the Genetic Diversity of Candidate Live Attenuated Zika Vaccines
por: Collins, Natalie D., et al.
Publicado: (2020)

Differences in Illness Severity among Circulating Norovirus Genotypes in a Large Pediatric Cohort with Acute Gastroenteritis
por: Bhavanam, Sudha, et al.
Publicado: (2020)

Metavirome Sequencing to Evaluate Norovirus Diversity in Sewage and Related Bioaccumulated Oysters
por: Strubbia, Sofia, et al.
Publicado: (2019)

Genetic Diversity and Distribution of Human Norovirus in China (1999–2011)
por: Yu, Yongxin, et al.
Publicado: (2014)

Are we ready to detect nematode diversity by next generation sequencing?
por: Peham, Thomas, et al.
Publicado: (2017)

Antigenic Relatedness of Norovirus GII.4 Variants Determined by Human Challenge Sera
por: Dai, Ying-Chun, et al.
Publicado: (2015)

Host Genetic Factors Affect Susceptibility to Norovirus Infections in Burkina Faso
por: Nordgren, Johan, et al.
Publicado: (2013)

Principles of Genetic Counseling in the Era of Next-Generation Sequencing
por: Yang, Mina, et al.
Publicado: (2018)

ShoRAH: estimating the genetic diversity of a mixed sample from next-generation sequencing data
por: Zagordi, Osvaldo, et al.
Publicado: (2011)

Estimation of genetic diversity in viral populations from next generation sequencing data with extremely deep coverage
por: Zukurov, Jean P., et al.
Publicado: (2016)

Genetic Diversity and Selection Signatures Within Diannan Small-Ear Pigs Revealed by Next-Generation Sequencing
por: Wu, Fen, et al.
Publicado: (2020)

Next-Generation Sequencing for Identifying Unknown Pathogens in Sentinel Immunocompromised Hosts
por: Fishman, Jay A.
Publicado: (2023)

PacBio next-generation sequencing uncovers Apicomplexa diversity in different habitats
por: Gad, Mahmoud, et al.
Publicado: (2023)

Molecular Epidemiology and Genetic Diversity of Norovirus in Young Children in Phnom Penh, Cambodia
por: Nakjarung, Kaewkanya, et al.
Publicado: (2016)

Integration of Next–Generation Sequencing, Viral Sequencing, and Host-Response Profiling for the Diagnosis of Acute Infections
por: Cheng, Henry, et al.
Publicado: (2017)

'Next-generation' sequencing becomes 'now-generation'
por: Neafsey, Daniel E, et al.
Publicado: (2011)

Norovirus Epidemiology and Genetic Diversity in Leipzig, Germany during 2013–2017
por: Ennuschat, Nora, et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_9kneq0vorngqckbtshsil07o6o