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Realization of tristability in a multiplicatively coupled dual-loop genetic network

Multistability is a crucial recurring theme in cell signaling. Multistability is attributed to the presence of positive feedback loops, but the general condition and essential mechanism for realizing multistability remain unclear. Here, we build a generic circuit model comprising two transcription f...

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Detalles Bibliográficos
Autores principales: Huang, Bo, Xia, Yun, Liu, Feng, Wang, Wei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932522/
https://www.ncbi.nlm.nih.gov/pubmed/27378101
http://dx.doi.org/10.1038/srep28096
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author Huang, Bo
Xia, Yun
Liu, Feng
Wang, Wei
author_facet Huang, Bo
Xia, Yun
Liu, Feng
Wang, Wei
author_sort Huang, Bo
collection PubMed
description Multistability is a crucial recurring theme in cell signaling. Multistability is attributed to the presence of positive feedback loops, but the general condition and essential mechanism for realizing multistability remain unclear. Here, we build a generic circuit model comprising two transcription factors and a microRNA, representing a kind of core architecture in gene regulatory networks. The circuit can be decomposed into two positive feedback loops (PFLs) or one PFL and one negative feedback loop (NFL), which are multiplicatively coupled. Bifurcation analyses of the model reveal that the circuit can achieve tristability through four kinds of bifurcation scenarios when parameter values are varied in a wide range. We formulate the general requirement for tristability in terms of logarithmic gain of the circuit. The parameter ranges for tristability and possible transition routes among steady states are determined by the combination of gain features of individual feedback loops. Coupling two PFLs with bistability or one NFL with a bistable PFL is most likely to generate tristability, but the underlying mechanisms are largely different. We also interpret published results and make testable predictions. This work sheds new light on interlinking feedback loops to realize tristability. The proposed theoretical framework can be of wide applicability.
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spelling pubmed-49325222016-07-08 Realization of tristability in a multiplicatively coupled dual-loop genetic network Huang, Bo Xia, Yun Liu, Feng Wang, Wei Sci Rep Article Multistability is a crucial recurring theme in cell signaling. Multistability is attributed to the presence of positive feedback loops, but the general condition and essential mechanism for realizing multistability remain unclear. Here, we build a generic circuit model comprising two transcription factors and a microRNA, representing a kind of core architecture in gene regulatory networks. The circuit can be decomposed into two positive feedback loops (PFLs) or one PFL and one negative feedback loop (NFL), which are multiplicatively coupled. Bifurcation analyses of the model reveal that the circuit can achieve tristability through four kinds of bifurcation scenarios when parameter values are varied in a wide range. We formulate the general requirement for tristability in terms of logarithmic gain of the circuit. The parameter ranges for tristability and possible transition routes among steady states are determined by the combination of gain features of individual feedback loops. Coupling two PFLs with bistability or one NFL with a bistable PFL is most likely to generate tristability, but the underlying mechanisms are largely different. We also interpret published results and make testable predictions. This work sheds new light on interlinking feedback loops to realize tristability. The proposed theoretical framework can be of wide applicability. Nature Publishing Group 2016-07-05 /pmc/articles/PMC4932522/ /pubmed/27378101 http://dx.doi.org/10.1038/srep28096 Text en Copyright © 2016, Macmillan Publishers Limited http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Huang, Bo
Xia, Yun
Liu, Feng
Wang, Wei
Realization of tristability in a multiplicatively coupled dual-loop genetic network
title Realization of tristability in a multiplicatively coupled dual-loop genetic network
title_full Realization of tristability in a multiplicatively coupled dual-loop genetic network
title_fullStr Realization of tristability in a multiplicatively coupled dual-loop genetic network
title_full_unstemmed Realization of tristability in a multiplicatively coupled dual-loop genetic network
title_short Realization of tristability in a multiplicatively coupled dual-loop genetic network
title_sort realization of tristability in a multiplicatively coupled dual-loop genetic network
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4932522/
https://www.ncbi.nlm.nih.gov/pubmed/27378101
http://dx.doi.org/10.1038/srep28096
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