A representation of a compressed de Bruijn graph for pan-genome analysis that enables search

BACKGROUND: Recently, Marcus et al. (Bioinformatics 30:3476–83, 2014) proposed to use a compressed de Bruijn graph to describe the relationship between the genomes of many individuals/strains of the same or closely related species. They devised an [Formula: see text] time algorithm called splitMEM t...

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Detalles Bibliográficos
Autores principales: Beller, Timo, Ohlebusch, Enno
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4950428/
https://www.ncbi.nlm.nih.gov/pubmed/27437028
http://dx.doi.org/10.1186/s13015-016-0083-7

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4950428/
https://www.ncbi.nlm.nih.gov/pubmed/27437028
http://dx.doi.org/10.1186/s13015-016-0083-7

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