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A representation of a compressed de Bruijn graph for pan-genome analysis that enables search
BACKGROUND: Recently, Marcus et al. (Bioinformatics 30:3476–83, 2014) proposed to use a compressed de Bruijn graph to describe the relationship between the genomes of many individuals/strains of the same or closely related species. They devised an [Formula: see text] time algorithm called splitMEM t...
| Autores principales: | , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
BioMed Central
2016
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4950428/ https://www.ncbi.nlm.nih.gov/pubmed/27437028 http://dx.doi.org/10.1186/s13015-016-0083-7 |