TransRate: reference-free quality assessment of de novo transcriptome assemblies

TransRate is a tool for reference-free quality assessment of de novo transcriptome assemblies. Using only the sequenced reads and the assembly as input, we show that multiple common artifacts of de novo transcriptome assembly can be readily detected. These include chimeras, structural errors, incomp...

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Detalles Bibliográficos
Autores principales: Smith-Unna, Richard, Boursnell, Chris, Patro, Rob, Hibberd, Julian M., Kelly, Steven
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2016
Materias:
Method
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971766/
https://www.ncbi.nlm.nih.gov/pubmed/27252236
http://dx.doi.org/10.1101/gr.196469.115

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4971766/
https://www.ncbi.nlm.nih.gov/pubmed/27252236
http://dx.doi.org/10.1101/gr.196469.115

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