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Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation

Recent studies suggest that cells make stochastic choices with respect to differentiation or division. However, the molecular mechanism underlying such stochasticity is unknown. We previously proposed that the timing of vertebrate neuronal differentiation is regulated by molecular oscillations of a...

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Autores principales: Phillips, Nick E, Manning, Cerys S, Pettini, Tom, Biga, Veronica, Marinopoulou, Elli, Stanley, Peter, Boyd, James, Bagnall, James, Paszek, Pawel, Spiller, David G, White, Michael RH, Goodfellow, Marc, Galla, Tobias, Rattray, Magnus, Papalopulu, Nancy
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5050025/
https://www.ncbi.nlm.nih.gov/pubmed/27700985
http://dx.doi.org/10.7554/eLife.16118
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author Phillips, Nick E
Manning, Cerys S
Pettini, Tom
Biga, Veronica
Marinopoulou, Elli
Stanley, Peter
Boyd, James
Bagnall, James
Paszek, Pawel
Spiller, David G
White, Michael RH
Goodfellow, Marc
Galla, Tobias
Rattray, Magnus
Papalopulu, Nancy
author_facet Phillips, Nick E
Manning, Cerys S
Pettini, Tom
Biga, Veronica
Marinopoulou, Elli
Stanley, Peter
Boyd, James
Bagnall, James
Paszek, Pawel
Spiller, David G
White, Michael RH
Goodfellow, Marc
Galla, Tobias
Rattray, Magnus
Papalopulu, Nancy
author_sort Phillips, Nick E
collection PubMed
description Recent studies suggest that cells make stochastic choices with respect to differentiation or division. However, the molecular mechanism underlying such stochasticity is unknown. We previously proposed that the timing of vertebrate neuronal differentiation is regulated by molecular oscillations of a transcriptional repressor, HES1, tuned by a post-transcriptional repressor, miR-9. Here, we computationally model the effects of intrinsic noise on the Hes1/miR-9 oscillator as a consequence of low molecular numbers of interacting species, determined experimentally. We report that increased stochasticity spreads the timing of differentiation in a population, such that initially equivalent cells differentiate over a period of time. Surprisingly, inherent stochasticity also increases the robustness of the progenitor state and lessens the impact of unequal, random distribution of molecules at cell division on the temporal spread of differentiation at the population level. This advantageous use of biological noise contrasts with the view that noise needs to be counteracted. DOI: http://dx.doi.org/10.7554/eLife.16118.001
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spelling pubmed-50500252016-10-06 Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation Phillips, Nick E Manning, Cerys S Pettini, Tom Biga, Veronica Marinopoulou, Elli Stanley, Peter Boyd, James Bagnall, James Paszek, Pawel Spiller, David G White, Michael RH Goodfellow, Marc Galla, Tobias Rattray, Magnus Papalopulu, Nancy eLife Computational and Systems Biology Recent studies suggest that cells make stochastic choices with respect to differentiation or division. However, the molecular mechanism underlying such stochasticity is unknown. We previously proposed that the timing of vertebrate neuronal differentiation is regulated by molecular oscillations of a transcriptional repressor, HES1, tuned by a post-transcriptional repressor, miR-9. Here, we computationally model the effects of intrinsic noise on the Hes1/miR-9 oscillator as a consequence of low molecular numbers of interacting species, determined experimentally. We report that increased stochasticity spreads the timing of differentiation in a population, such that initially equivalent cells differentiate over a period of time. Surprisingly, inherent stochasticity also increases the robustness of the progenitor state and lessens the impact of unequal, random distribution of molecules at cell division on the temporal spread of differentiation at the population level. This advantageous use of biological noise contrasts with the view that noise needs to be counteracted. DOI: http://dx.doi.org/10.7554/eLife.16118.001 eLife Sciences Publications, Ltd 2016-10-04 /pmc/articles/PMC5050025/ /pubmed/27700985 http://dx.doi.org/10.7554/eLife.16118 Text en © 2016, Phillips et al https://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Computational and Systems Biology
Phillips, Nick E
Manning, Cerys S
Pettini, Tom
Biga, Veronica
Marinopoulou, Elli
Stanley, Peter
Boyd, James
Bagnall, James
Paszek, Pawel
Spiller, David G
White, Michael RH
Goodfellow, Marc
Galla, Tobias
Rattray, Magnus
Papalopulu, Nancy
Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation
title Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation
title_full Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation
title_fullStr Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation
title_full_unstemmed Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation
title_short Stochasticity in the miR-9/Hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation
title_sort stochasticity in the mir-9/hes1 oscillatory network can account for clonal heterogeneity in the timing of differentiation
topic Computational and Systems Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5050025/
https://www.ncbi.nlm.nih.gov/pubmed/27700985
http://dx.doi.org/10.7554/eLife.16118
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