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Crystal structures of the two epimers from the unusual thermal C6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, 5a(RS),6(SR),7(RS),9a(SR),9b(SR) and 5a(RS),6(RS),7(RS),9a(SR),9b(SR)

The isomeric title compounds, C(12)H(13)NO(4) (Ia) and C(12)H(13)NO(4) (IIa), the products of an usual thermal C6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, represent the two different diastereomers and have very similar mol­ecular...

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Autores principales: Poplevin, Dmitry S., Zubkov, Fedor I., Dorovatovskii, Pavel V., Zubavichus, Yan V., Khrustalev, Victor N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5050770/
https://www.ncbi.nlm.nih.gov/pubmed/27746935
http://dx.doi.org/10.1107/S2056989016014420
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author Poplevin, Dmitry S.
Zubkov, Fedor I.
Dorovatovskii, Pavel V.
Zubavichus, Yan V.
Khrustalev, Victor N.
author_facet Poplevin, Dmitry S.
Zubkov, Fedor I.
Dorovatovskii, Pavel V.
Zubavichus, Yan V.
Khrustalev, Victor N.
author_sort Poplevin, Dmitry S.
collection PubMed
description The isomeric title compounds, C(12)H(13)NO(4) (Ia) and C(12)H(13)NO(4) (IIa), the products of an usual thermal C6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, represent the two different diastereomers and have very similar mol­ecular geometries. The mol­ecules of both compounds comprise a fused tetra­cyclic system containing four five-membered rings (pyrrolidine, pyrrolidinone, di­hydro­furan and tetra­hydro­furan), all of which adopt the usual envelope conformations. The dihedral angle between the basal planes of the pyrrolidine and pyrrolidinone rings are 14.3 (2) and 16.50 (11)°, respectively, for (Ia) and (IIa). The nitro­gen atom has a slightly pyramidalized geometry [bond-angle sum = 355.9 and 355.3°, for (Ia) and (IIa)], respectively. In the crystal of (Ia), mol­ecules form zigzag-like hydrogen-bonded chains along [010] through strong O—H⋯O hydrogen bonds and are further linked by weak C—H⋯O hydrogen bonds into complex two-tier layers parallel to (100). Unlike (Ia), the crystal of (IIa) contains centrosymmetric cyclic hydrogen-bonded dimers [graph set R (2) (2)(14)], formed through strong O—H⋯O hydrogen bonds and are further linked by weak C—H⋯O hydrogen bonds into ribbons extending across [101].
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spelling pubmed-50507702016-10-14 Crystal structures of the two epimers from the unusual thermal C6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, 5a(RS),6(SR),7(RS),9a(SR),9b(SR) and 5a(RS),6(RS),7(RS),9a(SR),9b(SR) Poplevin, Dmitry S. Zubkov, Fedor I. Dorovatovskii, Pavel V. Zubavichus, Yan V. Khrustalev, Victor N. Acta Crystallogr E Crystallogr Commun Research Communications The isomeric title compounds, C(12)H(13)NO(4) (Ia) and C(12)H(13)NO(4) (IIa), the products of an usual thermal C6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, represent the two different diastereomers and have very similar mol­ecular geometries. The mol­ecules of both compounds comprise a fused tetra­cyclic system containing four five-membered rings (pyrrolidine, pyrrolidinone, di­hydro­furan and tetra­hydro­furan), all of which adopt the usual envelope conformations. The dihedral angle between the basal planes of the pyrrolidine and pyrrolidinone rings are 14.3 (2) and 16.50 (11)°, respectively, for (Ia) and (IIa). The nitro­gen atom has a slightly pyramidalized geometry [bond-angle sum = 355.9 and 355.3°, for (Ia) and (IIa)], respectively. In the crystal of (Ia), mol­ecules form zigzag-like hydrogen-bonded chains along [010] through strong O—H⋯O hydrogen bonds and are further linked by weak C—H⋯O hydrogen bonds into complex two-tier layers parallel to (100). Unlike (Ia), the crystal of (IIa) contains centrosymmetric cyclic hydrogen-bonded dimers [graph set R (2) (2)(14)], formed through strong O—H⋯O hydrogen bonds and are further linked by weak C—H⋯O hydrogen bonds into ribbons extending across [101]. International Union of Crystallography 2016-09-16 /pmc/articles/PMC5050770/ /pubmed/27746935 http://dx.doi.org/10.1107/S2056989016014420 Text en © Poplevin et al. 2016 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Communications
Poplevin, Dmitry S.
Zubkov, Fedor I.
Dorovatovskii, Pavel V.
Zubavichus, Yan V.
Khrustalev, Victor N.
Crystal structures of the two epimers from the unusual thermal C6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, 5a(RS),6(SR),7(RS),9a(SR),9b(SR) and 5a(RS),6(RS),7(RS),9a(SR),9b(SR)
title Crystal structures of the two epimers from the unusual thermal C6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, 5a(RS),6(SR),7(RS),9a(SR),9b(SR) and 5a(RS),6(RS),7(RS),9a(SR),9b(SR)
title_full Crystal structures of the two epimers from the unusual thermal C6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, 5a(RS),6(SR),7(RS),9a(SR),9b(SR) and 5a(RS),6(RS),7(RS),9a(SR),9b(SR)
title_fullStr Crystal structures of the two epimers from the unusual thermal C6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, 5a(RS),6(SR),7(RS),9a(SR),9b(SR) and 5a(RS),6(RS),7(RS),9a(SR),9b(SR)
title_full_unstemmed Crystal structures of the two epimers from the unusual thermal C6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, 5a(RS),6(SR),7(RS),9a(SR),9b(SR) and 5a(RS),6(RS),7(RS),9a(SR),9b(SR)
title_short Crystal structures of the two epimers from the unusual thermal C6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, 5a(RS),6(SR),7(RS),9a(SR),9b(SR) and 5a(RS),6(RS),7(RS),9a(SR),9b(SR)
title_sort crystal structures of the two epimers from the unusual thermal c6-epimerization of 5-oxo-1,2,3,5,5a,6,7,9b-octa­hydro-7,9a-ep­oxy­pyrrolo­[2,1-a]iso­indole-6-carb­oxy­lic acid, 5a(rs),6(sr),7(rs),9a(sr),9b(sr) and 5a(rs),6(rs),7(rs),9a(sr),9b(sr)
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5050770/
https://www.ncbi.nlm.nih.gov/pubmed/27746935
http://dx.doi.org/10.1107/S2056989016014420
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