Cargando…

Simulating Next-Generation Sequencing Datasets from Empirical Mutation and Sequencing Models

An obstacle to validating and benchmarking methods for genome analysis is that there are few reference datasets available for which the “ground truth” about the mutational landscape of the sample genome is known and fully validated. Additionally, the free and public availability of real human genome...

Descripción completa

Detalles Bibliográficos
Autores principales:	Stephens, Zachary D., Hudson, Matthew E., Mainzer, Liudmila S., Taschuk, Morgan, Weber, Matthew R., Iyer, Ravishankar K.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2016
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5125660/ https://www.ncbi.nlm.nih.gov/pubmed/27893777 http://dx.doi.org/10.1371/journal.pone.0167047

Ejemplares similares

Exogene: A performant workflow for detecting viral integrations from paired-end next-generation sequencing data
por: Stephens, Zachary, et al.
Publicado: (2021)

Leveraging the power of next-generation sequencing to generate interactome datasets
por: Yu, Haiyuan, et al.
Publicado: (2011)

NGSNGS: next-generation simulator for next-generation sequencing data
por: Henriksen, Rasmus Amund, et al.
Publicado: (2023)

TrawlerWeb: an online de novo motif discovery tool for next-generation sequencing datasets
por: Dang, Louis T., et al.
Publicado: (2018)

Next Generation Sequencing for the Detection of Actionable Mutations in Solid and Liquid Tumors
por: Fox, Alan J., et al.
Publicado: (2016)

Next-Generation Sequencing
por: Xiong, Momiao, et al.
Publicado: (2010)

Next-generation sequencing
por: Reis-Filho, Jorge S
Publicado: (2009)

NeSSM: A Next-Generation Sequencing Simulator for Metagenomics
por: Jia, Ben, et al.
Publicado: (2013)

miRCat2: accurate prediction of plant and animal microRNAs from next-generation sequencing datasets
por: Paicu, Claudia, et al.
Publicado: (2017)

Next Generation DNA Sequencing and the Future of Genomic Medicine
por: Anderson, Matthew W., et al.
Publicado: (2010)

Targeted next-generation sequencing for routine clinical screening of mutations
por: Weaver, Jamie MJ, et al.
Publicado: (2011)

Diagnosis of Fanconi Anemia: Mutation Analysis by Next-Generation Sequencing
por: Ameziane, Najim, et al.
Publicado: (2012)

Mutation Scanning in Wheat by Exon Capture and Next-Generation Sequencing
por: King, Robert, et al.
Publicado: (2015)

Exome sequencing covers >98% of mutations identified on targeted next generation sequencing panels
por: LaDuca, Holly, et al.
Publicado: (2017)

Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data
por: Mende, Daniel R., et al.
Publicado: (2012)

Generation of Artificial FASTQ Files to Evaluate the Performance of Next-Generation Sequencing Pipelines
por: Frampton, Matthew, et al.
Publicado: (2012)

Looking for therapeutic antibodies in next-generation sequencing repositories
por: Krawczyk, Konrad, et al.
Publicado: (2019)

Targeted next-generation sequencing extends the phenotypic and mutational spectrums for EYS mutations
por: Gu, Shun, et al.
Publicado: (2016)

Next generation sequencing and comparative analyses of Xenopus mitogenomes
por: Lloyd, Rhiannon E, et al.
Publicado: (2012)

What is next generation sequencing?
por: Behjati, Sam, et al.
Publicado: (2013)

Next generation sequencing in cytology
por: Pisapia, Pasquale, et al.
Publicado: (2021)

Next-generation sequencing in dermatology
por: King, Andrew D., et al.
Publicado: (2023)

Next generation sequencing technologies for next generation plant breeding
por: Ray, Soham, et al.
Publicado: (2014)

Datasets for next-generation sequencing of DNA and RNA from urine and plasma of patients with prostate cancer
por: Nikitina, A.S., et al.
Publicado: (2016)

CLIA-certified next-generation sequencing analysis in the cloud
por: Zhang, Ying, et al.
Publicado: (2012)

Next generation sequencing in synovial sarcoma reveals novel gene mutations
por: Vlenterie, Myrella, et al.
Publicado: (2015)

Extended RAS and BRAF Mutation Analysis Using Next-Generation Sequencing
por: Sakai, Kazuko, et al.
Publicado: (2015)

Clinical mutational profiling of 1006 lung cancers by next generation sequencing
por: Illei, Peter B., et al.
Publicado: (2017)

Mutational spectrum of Chinese LGMD patients by targeted next-generation sequencing
por: Yu, Meng, et al.
Publicado: (2017)

Applying next-generation sequencing to unravel the mutational landscape in viral quasispecies
por: Lu, I-Na, et al.
Publicado: (2020)

Germline Mutations Related to Primary Hyperparathyroidism Identified by Next-Generation Sequencing
por: Park, Hye-Sun, et al.
Publicado: (2022)

'Next-generation' sequencing becomes 'now-generation'
por: Neafsey, Daniel E, et al.
Publicado: (2011)

Clinical mutational profiling and categorization of BRAF mutations in melanomas using next generation sequencing
por: Lokhandwala, Parvez M., et al.
Publicado: (2019)

Correction: Assessment of Metagenomic Assembly Using Simulated Next Generation Sequencing Data
Publicado: (2014)

Next-generation fungal identification using target enrichment and Nanopore sequencing
por: Yu, Pei-Ling, et al.
Publicado: (2023)

GenoPheno: cataloging large-scale phenotypic and next-generation sequencing data within human datasets
por: Gutiérrez-Sacristán, Alba, et al.
Publicado: (2020)

IMPUTOR: Phylogenetically Aware Software for Imputation of Errors in Next-Generation Sequencing
por: Jobin, Matthew, et al.
Publicado: (2018)

2443 Attitudes and preferences for return of results from next-generation sequencing
por: Neu, Matthew, et al.
Publicado: (2018)

Oral flora meningoencephalitis diagnosis by next-generation DNA sequencing
por: Heintz, Eric, et al.
Publicado: (2019)

Application of metagenomic next-generation sequencing in the diagnosis of infectious diseases of the central nervous system after empirical treatment
por: Chen, Ying-Ying, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_5o3snbah32itq555vmps7140kv