Cargando…
Improved assembly of noisy long reads by k-mer validation
Genome assembly depends critically on read length. Two recent technologies, from Pacific Biosciences (PacBio) and Oxford Nanopore, produce read lengths >20 kb, which yield de novo genome assemblies with vastly greater contiguity than those based on Sanger, Illumina, or other technologies. However...
Autores principales: | Carvalho, Antonio Bernardo, Dupim, Eduardo G., Goldstein, Gabriel |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory Press
2016
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5131822/ https://www.ncbi.nlm.nih.gov/pubmed/27831497 http://dx.doi.org/10.1101/gr.209247.116 |
Ejemplares similares
-
Canu: scalable and accurate long-read assembly via adaptive k-mer weighting and repeat separation
por: Koren, Sergey, et al.
Publicado: (2017) -
Haplotype-aware diplotyping from noisy long reads
por: Ebler, Jana, et al.
Publicado: (2019) -
Strainline: full-length de novo viral haplotype reconstruction from noisy long reads
por: Luo, Xiao, et al.
Publicado: (2022) -
kngMap: Sensitive and Fast Mapping Algorithm for Noisy Long Reads Based on the K-Mer Neighborhood Graph
por: Wei, Ze-Gang, et al.
Publicado: (2022) -
MINTyper: an outbreak-detection method for accurate and rapid SNP typing of clonal clusters with noisy long reads
por: Hallgren, Malte B, et al.
Publicado: (2021)