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Centrifuge: rapid and sensitive classification of metagenomic sequences

Centrifuge is a novel microbial classification engine that enables rapid, accurate, and sensitive labeling of reads and quantification of species on desktop computers. The system uses an indexing scheme based on the Burrows-Wheeler transform (BWT) and the Ferragina-Manzini (FM) index, optimized spec...

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Detalles Bibliográficos
Autores principales: Kim, Daehwan, Song, Li, Breitwieser, Florian P., Salzberg, Steven L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5131823/
https://www.ncbi.nlm.nih.gov/pubmed/27852649
http://dx.doi.org/10.1101/gr.210641.116