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Exome Sequencing Identifies Compound Heterozygous Mutations in SCN5A Associated with Congenital Complete Heart Block in the Thai Population

Background. Congenital heart block is characterized by blockage of electrical impulses from the atrioventricular node (AV node) to the ventricles. This blockage can be caused by ion channel impairment that is the result of genetic variation. This study aimed to investigate the possible causative var...

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Autores principales: Thongnak, Chuphong, Limprasert, Pornprot, Tangviriyapaiboon, Duangkamol, Silvilairat, Suchaya, Puangpetch, Apichaya, Pasomsub, Ekawat, Sukasem, Chonlaphat, Chantratita, Wasun
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5149683/
https://www.ncbi.nlm.nih.gov/pubmed/28018021
http://dx.doi.org/10.1155/2016/3684965
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author Thongnak, Chuphong
Limprasert, Pornprot
Tangviriyapaiboon, Duangkamol
Silvilairat, Suchaya
Puangpetch, Apichaya
Pasomsub, Ekawat
Sukasem, Chonlaphat
Chantratita, Wasun
author_facet Thongnak, Chuphong
Limprasert, Pornprot
Tangviriyapaiboon, Duangkamol
Silvilairat, Suchaya
Puangpetch, Apichaya
Pasomsub, Ekawat
Sukasem, Chonlaphat
Chantratita, Wasun
author_sort Thongnak, Chuphong
collection PubMed
description Background. Congenital heart block is characterized by blockage of electrical impulses from the atrioventricular node (AV node) to the ventricles. This blockage can be caused by ion channel impairment that is the result of genetic variation. This study aimed to investigate the possible causative variants in a Thai family with complete heart block by using whole exome sequencing. Methods. Genomic DNA was collected from a family consisting of five family members in three generations in which one of three children in generation III had complete heart block. Whole exome sequencing was performed on one complete heart block affected child and one unaffected sibling. Bioinformatics was used to identify annotated and filtered variants. Candidate variants were validated and the segregation analysis of other family members was performed. Results. This study identified compound heterozygous variants, c.101G>A and c.3832G>A, in the SCN5A gene and c.28730C>T in the TTN gene. Conclusions. Compound heterozygous variants in the SCN5A gene were found in the complete heart block affected child but these two variants were found only in the this affected sibling and were not found in other unaffected family members. Hence, these variants in the SCN5A gene were the most possible disease-causing variants in this family.
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spelling pubmed-51496832016-12-25 Exome Sequencing Identifies Compound Heterozygous Mutations in SCN5A Associated with Congenital Complete Heart Block in the Thai Population Thongnak, Chuphong Limprasert, Pornprot Tangviriyapaiboon, Duangkamol Silvilairat, Suchaya Puangpetch, Apichaya Pasomsub, Ekawat Sukasem, Chonlaphat Chantratita, Wasun Dis Markers Research Article Background. Congenital heart block is characterized by blockage of electrical impulses from the atrioventricular node (AV node) to the ventricles. This blockage can be caused by ion channel impairment that is the result of genetic variation. This study aimed to investigate the possible causative variants in a Thai family with complete heart block by using whole exome sequencing. Methods. Genomic DNA was collected from a family consisting of five family members in three generations in which one of three children in generation III had complete heart block. Whole exome sequencing was performed on one complete heart block affected child and one unaffected sibling. Bioinformatics was used to identify annotated and filtered variants. Candidate variants were validated and the segregation analysis of other family members was performed. Results. This study identified compound heterozygous variants, c.101G>A and c.3832G>A, in the SCN5A gene and c.28730C>T in the TTN gene. Conclusions. Compound heterozygous variants in the SCN5A gene were found in the complete heart block affected child but these two variants were found only in the this affected sibling and were not found in other unaffected family members. Hence, these variants in the SCN5A gene were the most possible disease-causing variants in this family. Hindawi Publishing Corporation 2016 2016-11-28 /pmc/articles/PMC5149683/ /pubmed/28018021 http://dx.doi.org/10.1155/2016/3684965 Text en Copyright © 2016 Chuphong Thongnak et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Thongnak, Chuphong
Limprasert, Pornprot
Tangviriyapaiboon, Duangkamol
Silvilairat, Suchaya
Puangpetch, Apichaya
Pasomsub, Ekawat
Sukasem, Chonlaphat
Chantratita, Wasun
Exome Sequencing Identifies Compound Heterozygous Mutations in SCN5A Associated with Congenital Complete Heart Block in the Thai Population
title Exome Sequencing Identifies Compound Heterozygous Mutations in SCN5A Associated with Congenital Complete Heart Block in the Thai Population
title_full Exome Sequencing Identifies Compound Heterozygous Mutations in SCN5A Associated with Congenital Complete Heart Block in the Thai Population
title_fullStr Exome Sequencing Identifies Compound Heterozygous Mutations in SCN5A Associated with Congenital Complete Heart Block in the Thai Population
title_full_unstemmed Exome Sequencing Identifies Compound Heterozygous Mutations in SCN5A Associated with Congenital Complete Heart Block in the Thai Population
title_short Exome Sequencing Identifies Compound Heterozygous Mutations in SCN5A Associated with Congenital Complete Heart Block in the Thai Population
title_sort exome sequencing identifies compound heterozygous mutations in scn5a associated with congenital complete heart block in the thai population
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5149683/
https://www.ncbi.nlm.nih.gov/pubmed/28018021
http://dx.doi.org/10.1155/2016/3684965
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