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Cooperativity of Negative Autoregulation Confers Increased Mutational Robustness

Negative autoregulation is universally found across organisms. In the bacterium Escherichia coli, transcription factors often repress their own expression to form a negative feedback network motif that enables robustness to changes in biochemical parameters. Here we present a simple phenomenological...

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Autores principales: Marciano, David C., Lua, Rhonald C., Herman, Christophe, Lichtarge, Olivier
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2016
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5152588/
https://www.ncbi.nlm.nih.gov/pubmed/27391757
http://dx.doi.org/10.1103/PhysRevLett.116.258104
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author Marciano, David C.
Lua, Rhonald C.
Herman, Christophe
Lichtarge, Olivier
author_facet Marciano, David C.
Lua, Rhonald C.
Herman, Christophe
Lichtarge, Olivier
author_sort Marciano, David C.
collection PubMed
description Negative autoregulation is universally found across organisms. In the bacterium Escherichia coli, transcription factors often repress their own expression to form a negative feedback network motif that enables robustness to changes in biochemical parameters. Here we present a simple phenomenological model of a negative feedback transcription factor repressing both itself and another target gene. The strength of the negative feedback is characterized by three parameters: the cooperativity in self-repression, the maximal expression rate of the transcription factor, and the apparent dissociation constant of the transcription factor binding to its own promoter. Analysis of the model shows that the target gene levels are robust to mutations in the transcription factor, and that the robustness improves as the degree of cooperativity in self-repression increases. The prediction is tested in the LexA transcriptional network of E. coli by altering cooperativity in self-repression and promoter strength. Indeed, we find robustness is correlated with the former. Considering the proposed importance of gene regulation in speciation, parameters governing a transcription factor’s robustness to mutation may have significant influence on a cell or organism’s capacity to evolve.
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spelling pubmed-51525882016-12-12 Cooperativity of Negative Autoregulation Confers Increased Mutational Robustness Marciano, David C. Lua, Rhonald C. Herman, Christophe Lichtarge, Olivier Phys Rev Lett Article Negative autoregulation is universally found across organisms. In the bacterium Escherichia coli, transcription factors often repress their own expression to form a negative feedback network motif that enables robustness to changes in biochemical parameters. Here we present a simple phenomenological model of a negative feedback transcription factor repressing both itself and another target gene. The strength of the negative feedback is characterized by three parameters: the cooperativity in self-repression, the maximal expression rate of the transcription factor, and the apparent dissociation constant of the transcription factor binding to its own promoter. Analysis of the model shows that the target gene levels are robust to mutations in the transcription factor, and that the robustness improves as the degree of cooperativity in self-repression increases. The prediction is tested in the LexA transcriptional network of E. coli by altering cooperativity in self-repression and promoter strength. Indeed, we find robustness is correlated with the former. Considering the proposed importance of gene regulation in speciation, parameters governing a transcription factor’s robustness to mutation may have significant influence on a cell or organism’s capacity to evolve. 2016-06-22 2016-06-24 /pmc/articles/PMC5152588/ /pubmed/27391757 http://dx.doi.org/10.1103/PhysRevLett.116.258104 Text en http://creativecommons.org/licenses/by/3.0/ Published by the American Physical Society under the terms of the Creative Commons Attribution 3.0 License. Further distribution of this work must maintain attribution to the author(s) and the published article’s title, journal citation, and DOI.
spellingShingle Article
Marciano, David C.
Lua, Rhonald C.
Herman, Christophe
Lichtarge, Olivier
Cooperativity of Negative Autoregulation Confers Increased Mutational Robustness
title Cooperativity of Negative Autoregulation Confers Increased Mutational Robustness
title_full Cooperativity of Negative Autoregulation Confers Increased Mutational Robustness
title_fullStr Cooperativity of Negative Autoregulation Confers Increased Mutational Robustness
title_full_unstemmed Cooperativity of Negative Autoregulation Confers Increased Mutational Robustness
title_short Cooperativity of Negative Autoregulation Confers Increased Mutational Robustness
title_sort cooperativity of negative autoregulation confers increased mutational robustness
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5152588/
https://www.ncbi.nlm.nih.gov/pubmed/27391757
http://dx.doi.org/10.1103/PhysRevLett.116.258104
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