Alignment-free [Formula: see text] oligonucleotide frequency dissimilarity measure improves prediction of hosts from metagenomically-derived viral sequences

Viruses and their host genomes often share similar oligonucleotide frequency (ONF) patterns, which can be used to predict the host of a given virus by finding the host with the greatest ONF similarity. We comprehensively compared 11 ONF metrics using several k-mer lengths for predicting host taxonom...

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Detalles Bibliográficos
Autores principales: Ahlgren, Nathan A., Ren, Jie, Lu, Yang Young, Fuhrman, Jed A., Sun, Fengzhu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
Computational Biology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5224470/
https://www.ncbi.nlm.nih.gov/pubmed/27899557
http://dx.doi.org/10.1093/nar/gkw1002

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5224470/
https://www.ncbi.nlm.nih.gov/pubmed/27899557
http://dx.doi.org/10.1093/nar/gkw1002

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