RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys

BACKGROUND: Taxonomic profiling of microbial communities is often performed using small subunit ribosomal RNA (SSU) amplicon sequencing (16S or 18S), while environmental shotgun sequencing is often focused on functional analysis. Large shotgun datasets contain a significant number of SSU sequences a...

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Detalles Bibliográficos
Autores principales: Xie, Chao, Goi, Chin Lui Wesley, Huson, Daniel H., Little, Peter F. R., Williams, Rohan B. H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2016
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5259810/
https://www.ncbi.nlm.nih.gov/pubmed/28155666
http://dx.doi.org/10.1186/s12859-016-1378-x

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5259810/
https://www.ncbi.nlm.nih.gov/pubmed/28155666
http://dx.doi.org/10.1186/s12859-016-1378-x

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