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Applying Human ADAR1p110 and ADAR1p150 for Site-Directed RNA Editing—G/C Substitution Stabilizes GuideRNAs against Editing

Site-directed RNA editing is an approach to reprogram genetic information at the RNA level. We recently introduced a novel guideRNA that allows for the recruitment of human ADAR2 to manipulate genetic information. Here, we show that the current guideRNA design is already able to recruit another huma...

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Autores principales: Heep, Madeleine, Mach, Pia, Reautschnig, Philipp, Wettengel, Jacqueline, Stafforst, Thorsten
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5295028/
https://www.ncbi.nlm.nih.gov/pubmed/28098820
http://dx.doi.org/10.3390/genes8010034
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author Heep, Madeleine
Mach, Pia
Reautschnig, Philipp
Wettengel, Jacqueline
Stafforst, Thorsten
author_facet Heep, Madeleine
Mach, Pia
Reautschnig, Philipp
Wettengel, Jacqueline
Stafforst, Thorsten
author_sort Heep, Madeleine
collection PubMed
description Site-directed RNA editing is an approach to reprogram genetic information at the RNA level. We recently introduced a novel guideRNA that allows for the recruitment of human ADAR2 to manipulate genetic information. Here, we show that the current guideRNA design is already able to recruit another human deaminase, ADAR1, in both isoforms, p110 and p150. However, further optimization seems necessary as the current design is less efficient for ADAR1 isoforms. Furthermore, we describe hotspots at which the guideRNA itself is edited and show a way to circumvent this auto-editing without losing editing efficiency at the target. Both findings are important for the advancement of site-directed RNA editing as a tool in basic biology or as a platform for therapeutic editing.
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spelling pubmed-52950282017-02-10 Applying Human ADAR1p110 and ADAR1p150 for Site-Directed RNA Editing—G/C Substitution Stabilizes GuideRNAs against Editing Heep, Madeleine Mach, Pia Reautschnig, Philipp Wettengel, Jacqueline Stafforst, Thorsten Genes (Basel) Article Site-directed RNA editing is an approach to reprogram genetic information at the RNA level. We recently introduced a novel guideRNA that allows for the recruitment of human ADAR2 to manipulate genetic information. Here, we show that the current guideRNA design is already able to recruit another human deaminase, ADAR1, in both isoforms, p110 and p150. However, further optimization seems necessary as the current design is less efficient for ADAR1 isoforms. Furthermore, we describe hotspots at which the guideRNA itself is edited and show a way to circumvent this auto-editing without losing editing efficiency at the target. Both findings are important for the advancement of site-directed RNA editing as a tool in basic biology or as a platform for therapeutic editing. MDPI 2017-01-14 /pmc/articles/PMC5295028/ /pubmed/28098820 http://dx.doi.org/10.3390/genes8010034 Text en © 2017 by the authors; licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC-BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Heep, Madeleine
Mach, Pia
Reautschnig, Philipp
Wettengel, Jacqueline
Stafforst, Thorsten
Applying Human ADAR1p110 and ADAR1p150 for Site-Directed RNA Editing—G/C Substitution Stabilizes GuideRNAs against Editing
title Applying Human ADAR1p110 and ADAR1p150 for Site-Directed RNA Editing—G/C Substitution Stabilizes GuideRNAs against Editing
title_full Applying Human ADAR1p110 and ADAR1p150 for Site-Directed RNA Editing—G/C Substitution Stabilizes GuideRNAs against Editing
title_fullStr Applying Human ADAR1p110 and ADAR1p150 for Site-Directed RNA Editing—G/C Substitution Stabilizes GuideRNAs against Editing
title_full_unstemmed Applying Human ADAR1p110 and ADAR1p150 for Site-Directed RNA Editing—G/C Substitution Stabilizes GuideRNAs against Editing
title_short Applying Human ADAR1p110 and ADAR1p150 for Site-Directed RNA Editing—G/C Substitution Stabilizes GuideRNAs against Editing
title_sort applying human adar1p110 and adar1p150 for site-directed rna editing—g/c substitution stabilizes guidernas against editing
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5295028/
https://www.ncbi.nlm.nih.gov/pubmed/28098820
http://dx.doi.org/10.3390/genes8010034
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