Cargando…

Comparison of whole genome amplification techniques for human single cell exome sequencing

BACKGROUND: Whole genome amplification (WGA) is currently a prerequisite for single cell whole genome or exome sequencing. Depending on the method used the rate of artifact formation, allelic dropout and sequence coverage over the genome may differ significantly. RESULTS: The largest difference betw...

Descripción completa

Detalles Bibliográficos
Autores principales:	Borgström, Erik, Paterlini, Marta, Mold, Jeff E., Frisen, Jonas, Lundeberg, Joakim
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5313163/ https://www.ncbi.nlm.nih.gov/pubmed/28207771 http://dx.doi.org/10.1371/journal.pone.0171566

Ejemplares similares

Conbase: a software for unsupervised discovery of clonal somatic mutations in single cells through read phasing
por: Hård, Joanna, et al.
Publicado: (2019)

Assessment of Whole Genome Amplification for Sequence Capture and Massively Parallel Sequencing
por: Hasmats, Johanna, et al.
Publicado: (2014)

Large Scale Library Generation for High Throughput Sequencing
por: Borgström, Erik, et al.
Publicado: (2011)

Transcriptome analysis in primary neural stem cells using a tag cDNA amplification method
por: Sievertzon, Maria, et al.
Publicado: (2005)

Tri-nucleotide threading for parallel amplification of minute amounts of genomic DNA
por: Pettersson, Erik, et al.
Publicado: (2006)

Epidermal growth factor (EGF) withdrawal masks gene expression differences in the study of pituitary adenylate cyclase-activating polypeptide (PACAP) activation of primary neural stem cell proliferation
por: Sievertzon, Maria, et al.
Publicado: (2005)

Screening the human exome: a comparison of whole genome and whole transcriptome sequencing
por: Cirulli, Elizabeth T, et al.
Publicado: (2010)

Whole-exome Sequencing of Prostate Cancer in Sardinian Identify Recurrent UDP-glucuronosyltransferase Amplifications
por: Zeng, Tiansheng, et al.
Publicado: (2021)

Analysis of allelic expression patterns in clonal somatic cells by single-cell RNA-seq
por: Reinius, Björn, et al.
Publicado: (2016)

Clonal relations in the mouse brain revealed by single-cell and spatial transcriptomics
por: Ratz, Michael, et al.
Publicado: (2022)

A comparison of whole genome sequencing with exome sequencing for family-based association studies
por: Lacey, Sean, et al.
Publicado: (2014)

Whole exome sequencing in the rat
por: Foley, Julie F., et al.
Publicado: (2018)

Massive and parallel expression profiling using microarrayed single-cell sequencing
por: Vickovic, Sanja, et al.
Publicado: (2016)

Comparison of seven single cell whole genome amplification commercial kits using targeted sequencing
por: Biezuner, Tamir, et al.
Publicado: (2021)

Opportunities and challenges of whole-genome and -exome sequencing
por: Petersen, Britt-Sabina, et al.
Publicado: (2017)

Comparison of single cell sequencing data between two whole genome amplification methods on two sequencing platforms
por: Chen, DaYang, et al.
Publicado: (2018)

Comparison of actionable events detected in cancer genomes by whole-genome sequencing, in silico whole-exome and mutation panels
por: Ramarao-Milne, P., et al.
Publicado: (2022)

Analytical validation of whole exome and whole genome sequencing for clinical applications
por: Linderman, Michael D, et al.
Publicado: (2014)

Readability of informed consent forms for whole-exome and whole-genome sequencing
por: Niemiec, Emilia, et al.
Publicado: (2017)

A Quantitative Comparison of Single-Cell Whole Genome Amplification Methods
por: de Bourcy, Charles F. A., et al.
Publicado: (2014)

Exome sequencing: the sweet spot before whole genomes
por: Teer, Jamie K., et al.
Publicado: (2010)

Diagnostic value of exome and whole genome sequencing in craniosynostosis
por: Miller, Kerry A, et al.
Publicado: (2017)

Whole Exome Sequencing in Atrial Fibrillation
por: Lubitz, Steven A., et al.
Publicado: (2016)

Whole-exome sequencing study of hypospadias
por: Chen, Zhongzhong, et al.
Publicado: (2023)

High-Density Microwell Chip for Culture and Analysis of Stem Cells
por: Lindström, Sara, et al.
Publicado: (2009)

A Comparison of Tools for Copy-Number Variation Detection in Germline Whole Exome and Whole Genome Sequencing Data
por: Gabrielaite, Migle, et al.
Publicado: (2021)

Ethical and legal implications of whole genome and whole exome sequencing in African populations
por: Wright, Galen EB, et al.
Publicado: (2013)

Comparison of somatic mutation calling methods in amplicon and whole exome sequence data
por: Xu, Huilei, et al.
Publicado: (2014)

Platform comparison of detecting copy number variants with microarrays and whole-exome sequencing
por: de Ligt, Joep, et al.
Publicado: (2014)

Genetic Aspects of Small for Gestational Age Infants Using Targeted-Exome Sequencing and Whole-Exome Sequencing: A Single Center Study
por: Park, Su-Jung, et al.
Publicado: (2022)

Clinical application of whole-exome sequencing: A retrospective, single-center study
por: Zhang, Qiang, et al.
Publicado: (2021)

Isolation of single cells from human hepatoblastoma tissues for whole-exome sequencing
por: He, Jian, et al.
Publicado: (2023)

Variant detection sensitivity and biases in whole genome and exome sequencing
por: Meynert, Alison M, et al.
Publicado: (2014)

Genomic Insights Into Sepsis Course Using Whole Exome Sequencing
por: Flores, Carlos, et al.
Publicado: (2016)

Genomic Characterization by Whole-Exome Sequencing of Hypermobility Spectrum Disorder
por: Alanis-Funes, Gerardo J., et al.
Publicado: (2022)

Mutation discovery in mice by whole exome sequencing
por: Fairfield, Heather, et al.
Publicado: (2011)

Whole‐exome sequencing for variant discovery in blepharospasm
por: Tian, Jun, et al.
Publicado: (2018)

Apert's syndrome: Study by whole exome sequencing
por: Munshi, Anjana, et al.
Publicado: (2017)

Whole exome sequencing for diagnosis of hereditary thrombocytopenia
por: Mekchay, Ponthip, et al.
Publicado: (2020)

Patterns of Whole Exome Sequencing in Resected Cholangiocarcinoma
por: Thornblade, Lucas W., et al.
Publicado: (2021)

Cannot write session to /tmp/vufind_sessions/sess_isu4mamnaf4brs3v1v4p2rq7ld