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Unifying view of mechanical and functional hotspots across class A GPCRs

G protein-coupled receptors (GPCRs) are the largest superfamily of signaling proteins. Their activation process is accompanied by conformational changes that have not yet been fully uncovered. Here, we carry out a novel comparative analysis of internal structural fluctuations across a variety of rec...

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Autores principales: Ponzoni, Luca, Rossetti, Giulia, Maggi, Luca, Giorgetti, Alejandro, Carloni, Paolo, Micheletti, Cristian
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5315405/
https://www.ncbi.nlm.nih.gov/pubmed/28158180
http://dx.doi.org/10.1371/journal.pcbi.1005381
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author Ponzoni, Luca
Rossetti, Giulia
Maggi, Luca
Giorgetti, Alejandro
Carloni, Paolo
Micheletti, Cristian
author_facet Ponzoni, Luca
Rossetti, Giulia
Maggi, Luca
Giorgetti, Alejandro
Carloni, Paolo
Micheletti, Cristian
author_sort Ponzoni, Luca
collection PubMed
description G protein-coupled receptors (GPCRs) are the largest superfamily of signaling proteins. Their activation process is accompanied by conformational changes that have not yet been fully uncovered. Here, we carry out a novel comparative analysis of internal structural fluctuations across a variety of receptors from class A GPCRs, which currently has the richest structural coverage. We infer the local mechanical couplings underpinning the receptors’ functional dynamics and finally identify those amino acids whose virtual deletion causes a significant softening of the mechanical network. The relevance of these amino acids is demonstrated by their overlap with those known to be crucial for GPCR function, based on static structural criteria. The differences with the latter set allow us to identify those sites whose functional role is more clearly detected by considering dynamical and mechanical properties. Of these sites with a genuine mechanical/dynamical character, the top ranking is amino acid 7x52, a previously unexplored, and experimentally verifiable key site for GPCR conformational response to ligand binding.
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spelling pubmed-53154052017-03-03 Unifying view of mechanical and functional hotspots across class A GPCRs Ponzoni, Luca Rossetti, Giulia Maggi, Luca Giorgetti, Alejandro Carloni, Paolo Micheletti, Cristian PLoS Comput Biol Research Article G protein-coupled receptors (GPCRs) are the largest superfamily of signaling proteins. Their activation process is accompanied by conformational changes that have not yet been fully uncovered. Here, we carry out a novel comparative analysis of internal structural fluctuations across a variety of receptors from class A GPCRs, which currently has the richest structural coverage. We infer the local mechanical couplings underpinning the receptors’ functional dynamics and finally identify those amino acids whose virtual deletion causes a significant softening of the mechanical network. The relevance of these amino acids is demonstrated by their overlap with those known to be crucial for GPCR function, based on static structural criteria. The differences with the latter set allow us to identify those sites whose functional role is more clearly detected by considering dynamical and mechanical properties. Of these sites with a genuine mechanical/dynamical character, the top ranking is amino acid 7x52, a previously unexplored, and experimentally verifiable key site for GPCR conformational response to ligand binding. Public Library of Science 2017-02-03 /pmc/articles/PMC5315405/ /pubmed/28158180 http://dx.doi.org/10.1371/journal.pcbi.1005381 Text en © 2017 Ponzoni et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Ponzoni, Luca
Rossetti, Giulia
Maggi, Luca
Giorgetti, Alejandro
Carloni, Paolo
Micheletti, Cristian
Unifying view of mechanical and functional hotspots across class A GPCRs
title Unifying view of mechanical and functional hotspots across class A GPCRs
title_full Unifying view of mechanical and functional hotspots across class A GPCRs
title_fullStr Unifying view of mechanical and functional hotspots across class A GPCRs
title_full_unstemmed Unifying view of mechanical and functional hotspots across class A GPCRs
title_short Unifying view of mechanical and functional hotspots across class A GPCRs
title_sort unifying view of mechanical and functional hotspots across class a gpcrs
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5315405/
https://www.ncbi.nlm.nih.gov/pubmed/28158180
http://dx.doi.org/10.1371/journal.pcbi.1005381
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