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Effects of different kinds of essentiality on sequence evolution of human testis proteins

We asked if essentiality for either fertility or viability differentially affects sequence evolution of human testis proteins. Based on murine knockout data, we classified a set of 965 proteins expressed in human seminiferous tubules into three categories: proteins essential for prepubertal survival...

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Autores principales: Schumacher, Julia, Zischler, Hans, Herlyn, Holger
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5341092/
https://www.ncbi.nlm.nih.gov/pubmed/28272493
http://dx.doi.org/10.1038/srep43534
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author Schumacher, Julia
Zischler, Hans
Herlyn, Holger
author_facet Schumacher, Julia
Zischler, Hans
Herlyn, Holger
author_sort Schumacher, Julia
collection PubMed
description We asked if essentiality for either fertility or viability differentially affects sequence evolution of human testis proteins. Based on murine knockout data, we classified a set of 965 proteins expressed in human seminiferous tubules into three categories: proteins essential for prepubertal survival (“lethality proteins”), associated with male sub- or infertility (“male sub-/infertility proteins”), and nonessential proteins. In our testis protein dataset, lethality genes evolved significantly slower than nonessential and male sub-/infertility genes, which is in line with other authors’ findings. Using tissue specificity, connectivity in the protein-protein interaction (PPI) network, and multifunctionality as proxies for evolutionary constraints, we found that of the three categories, proteins linked to male sub- or infertility are least constrained. Lethality proteins, on the other hand, are characterized by broad expression, many PPI partners, and high multifunctionality, all of which points to strong evolutionary constraints. We conclude that compared with lethality proteins, those linked to male sub- or infertility are nonetheless indispensable, but evolve under more relaxed constraints. Finally, adaptive evolution in response to postmating sexual selection could further accelerate evolutionary rates of male sub- or infertility proteins expressed in human testis. These findings may become useful for in silico detection of human sub-/infertility genes.
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spelling pubmed-53410922017-03-10 Effects of different kinds of essentiality on sequence evolution of human testis proteins Schumacher, Julia Zischler, Hans Herlyn, Holger Sci Rep Article We asked if essentiality for either fertility or viability differentially affects sequence evolution of human testis proteins. Based on murine knockout data, we classified a set of 965 proteins expressed in human seminiferous tubules into three categories: proteins essential for prepubertal survival (“lethality proteins”), associated with male sub- or infertility (“male sub-/infertility proteins”), and nonessential proteins. In our testis protein dataset, lethality genes evolved significantly slower than nonessential and male sub-/infertility genes, which is in line with other authors’ findings. Using tissue specificity, connectivity in the protein-protein interaction (PPI) network, and multifunctionality as proxies for evolutionary constraints, we found that of the three categories, proteins linked to male sub- or infertility are least constrained. Lethality proteins, on the other hand, are characterized by broad expression, many PPI partners, and high multifunctionality, all of which points to strong evolutionary constraints. We conclude that compared with lethality proteins, those linked to male sub- or infertility are nonetheless indispensable, but evolve under more relaxed constraints. Finally, adaptive evolution in response to postmating sexual selection could further accelerate evolutionary rates of male sub- or infertility proteins expressed in human testis. These findings may become useful for in silico detection of human sub-/infertility genes. Nature Publishing Group 2017-03-08 /pmc/articles/PMC5341092/ /pubmed/28272493 http://dx.doi.org/10.1038/srep43534 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Schumacher, Julia
Zischler, Hans
Herlyn, Holger
Effects of different kinds of essentiality on sequence evolution of human testis proteins
title Effects of different kinds of essentiality on sequence evolution of human testis proteins
title_full Effects of different kinds of essentiality on sequence evolution of human testis proteins
title_fullStr Effects of different kinds of essentiality on sequence evolution of human testis proteins
title_full_unstemmed Effects of different kinds of essentiality on sequence evolution of human testis proteins
title_short Effects of different kinds of essentiality on sequence evolution of human testis proteins
title_sort effects of different kinds of essentiality on sequence evolution of human testis proteins
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5341092/
https://www.ncbi.nlm.nih.gov/pubmed/28272493
http://dx.doi.org/10.1038/srep43534
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