Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets

Marker gene sequencing of microbial communities has generated big datasets of microbial relative abundances varying across environmental conditions, sample sites and treatments. These data often come with putative phylogenies, providing unique opportunities to investigate how shared evolutionary his...

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Detalles Bibliográficos
Autores principales: Washburne, Alex D., Silverman, Justin D., Leff, Jonathan W., Bennett, Dominic J., Darcy, John L., Mukherjee, Sayan, Fierer, Noah, David, Lawrence A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: PeerJ Inc. 2017
Materias:
Computational Biology
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345826/
https://www.ncbi.nlm.nih.gov/pubmed/28289558
http://dx.doi.org/10.7717/peerj.2969

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345826/
https://www.ncbi.nlm.nih.gov/pubmed/28289558
http://dx.doi.org/10.7717/peerj.2969

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