Cargando…
Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets
Marker gene sequencing of microbial communities has generated big datasets of microbial relative abundances varying across environmental conditions, sample sites and treatments. These data often come with putative phylogenies, providing unique opportunities to investigate how shared evolutionary his...
Autores principales: | Washburne, Alex D., Silverman, Justin D., Leff, Jonathan W., Bennett, Dominic J., Darcy, John L., Mukherjee, Sayan, Fierer, Noah, David, Lawrence A. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
PeerJ Inc.
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345826/ https://www.ncbi.nlm.nih.gov/pubmed/28289558 http://dx.doi.org/10.7717/peerj.2969 |
Ejemplares similares
-
A phylogenetic transform enhances analysis of compositional microbiota data
por: Silverman, Justin D, et al.
Publicado: (2017) -
Measuring and mitigating PCR bias in microbiota datasets
por: Silverman, Justin D., et al.
Publicado: (2021) -
Using influenza surveillance networks to estimate state-specific prevalence of SARS-CoV-2 in the United States
por: Silverman, Justin D., et al.
Publicado: (2020) -
Bacterial Communities Associated with the Surfaces of Fresh Fruits and Vegetables
por: Leff, Jonathan W., et al.
Publicado: (2013) -
Microdiversity characterizes prevalent phylogenetic clades in the glacier-fed stream microbiome
por: Fodelianakis, Stilianos, et al.
Publicado: (2021)