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Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets

Marker gene sequencing of microbial communities has generated big datasets of microbial relative abundances varying across environmental conditions, sample sites and treatments. These data often come with putative phylogenies, providing unique opportunities to investigate how shared evolutionary his...

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Dettagli Bibliografici
Autori principali: Washburne, Alex D., Silverman, Justin D., Leff, Jonathan W., Bennett, Dominic J., Darcy, John L., Mukherjee, Sayan, Fierer, Noah, David, Lawrence A.
Natura: Online Articolo testo
Lingua:English
Pubblicazione: PeerJ Inc. 2017
Soggetti:
Accesso online:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345826/
https://www.ncbi.nlm.nih.gov/pubmed/28289558
http://dx.doi.org/10.7717/peerj.2969