Phylogenetic factorization of compositional data yields lineage-level associations in microbiome datasets

Marker gene sequencing of microbial communities has generated big datasets of microbial relative abundances varying across environmental conditions, sample sites and treatments. These data often come with putative phylogenies, providing unique opportunities to investigate how shared evolutionary his...

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Detalhes bibliográficos
Principais autores: Washburne, Alex D., Silverman, Justin D., Leff, Jonathan W., Bennett, Dominic J., Darcy, John L., Mukherjee, Sayan, Fierer, Noah, David, Lawrence A.
Formato: Online Atigo Texto
Idioma:English
Publicado em: PeerJ Inc. 2017
Assuntos:
Computational Biology
Acesso em linha:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345826/
https://www.ncbi.nlm.nih.gov/pubmed/28289558
http://dx.doi.org/10.7717/peerj.2969

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5345826/
https://www.ncbi.nlm.nih.gov/pubmed/28289558
http://dx.doi.org/10.7717/peerj.2969

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