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Positional Enrichment by Proton Analysis (PEPA): A One‐Dimensional (1)H‐NMR Approach for (13)C Stable Isotope Tracer Studies in Metabolomics

A novel metabolomics approach for NMR‐based stable isotope tracer studies called PEPA is presented, and its performance validated using human cancer cells. PEPA detects the position of carbon label in isotopically enriched metabolites and quantifies fractional enrichment by indirect determination of...

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Autores principales: Vinaixa, Maria, Rodríguez, Miguel A., Aivio, Suvi, Capellades, Jordi, Gómez, Josep, Canyellas, Nicolau, Stracker, Travis H., Yanes, Oscar
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5363230/
https://www.ncbi.nlm.nih.gov/pubmed/28220994
http://dx.doi.org/10.1002/anie.201611347
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author Vinaixa, Maria
Rodríguez, Miguel A.
Aivio, Suvi
Capellades, Jordi
Gómez, Josep
Canyellas, Nicolau
Stracker, Travis H.
Yanes, Oscar
author_facet Vinaixa, Maria
Rodríguez, Miguel A.
Aivio, Suvi
Capellades, Jordi
Gómez, Josep
Canyellas, Nicolau
Stracker, Travis H.
Yanes, Oscar
author_sort Vinaixa, Maria
collection PubMed
description A novel metabolomics approach for NMR‐based stable isotope tracer studies called PEPA is presented, and its performance validated using human cancer cells. PEPA detects the position of carbon label in isotopically enriched metabolites and quantifies fractional enrichment by indirect determination of (13)C‐satellite peaks using 1D‐(1)H‐NMR spectra. In comparison with (13)C‐NMR, TOCSY and HSQC, PEPA improves sensitivity, accelerates the elucidation of (13)C positions in labeled metabolites and the quantification of the percentage of stable isotope enrichment. Altogether, PEPA provides a novel framework for extending the high‐throughput of (1)H‐NMR metabolic profiling to stable isotope tracing in metabolomics, facilitating and complementing the information derived from 2D‐NMR experiments and expanding the range of isotopically enriched metabolites detected in cellular extracts.
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spelling pubmed-53632302017-04-06 Positional Enrichment by Proton Analysis (PEPA): A One‐Dimensional (1)H‐NMR Approach for (13)C Stable Isotope Tracer Studies in Metabolomics Vinaixa, Maria Rodríguez, Miguel A. Aivio, Suvi Capellades, Jordi Gómez, Josep Canyellas, Nicolau Stracker, Travis H. Yanes, Oscar Angew Chem Int Ed Engl Communications A novel metabolomics approach for NMR‐based stable isotope tracer studies called PEPA is presented, and its performance validated using human cancer cells. PEPA detects the position of carbon label in isotopically enriched metabolites and quantifies fractional enrichment by indirect determination of (13)C‐satellite peaks using 1D‐(1)H‐NMR spectra. In comparison with (13)C‐NMR, TOCSY and HSQC, PEPA improves sensitivity, accelerates the elucidation of (13)C positions in labeled metabolites and the quantification of the percentage of stable isotope enrichment. Altogether, PEPA provides a novel framework for extending the high‐throughput of (1)H‐NMR metabolic profiling to stable isotope tracing in metabolomics, facilitating and complementing the information derived from 2D‐NMR experiments and expanding the range of isotopically enriched metabolites detected in cellular extracts. John Wiley and Sons Inc. 2017-02-21 2017-03-20 /pmc/articles/PMC5363230/ /pubmed/28220994 http://dx.doi.org/10.1002/anie.201611347 Text en © 2017 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs (http://creativecommons.org/licenses/by-nc-nd/4.0/) License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Communications
Vinaixa, Maria
Rodríguez, Miguel A.
Aivio, Suvi
Capellades, Jordi
Gómez, Josep
Canyellas, Nicolau
Stracker, Travis H.
Yanes, Oscar
Positional Enrichment by Proton Analysis (PEPA): A One‐Dimensional (1)H‐NMR Approach for (13)C Stable Isotope Tracer Studies in Metabolomics
title Positional Enrichment by Proton Analysis (PEPA): A One‐Dimensional (1)H‐NMR Approach for (13)C Stable Isotope Tracer Studies in Metabolomics
title_full Positional Enrichment by Proton Analysis (PEPA): A One‐Dimensional (1)H‐NMR Approach for (13)C Stable Isotope Tracer Studies in Metabolomics
title_fullStr Positional Enrichment by Proton Analysis (PEPA): A One‐Dimensional (1)H‐NMR Approach for (13)C Stable Isotope Tracer Studies in Metabolomics
title_full_unstemmed Positional Enrichment by Proton Analysis (PEPA): A One‐Dimensional (1)H‐NMR Approach for (13)C Stable Isotope Tracer Studies in Metabolomics
title_short Positional Enrichment by Proton Analysis (PEPA): A One‐Dimensional (1)H‐NMR Approach for (13)C Stable Isotope Tracer Studies in Metabolomics
title_sort positional enrichment by proton analysis (pepa): a one‐dimensional (1)h‐nmr approach for (13)c stable isotope tracer studies in metabolomics
topic Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5363230/
https://www.ncbi.nlm.nih.gov/pubmed/28220994
http://dx.doi.org/10.1002/anie.201611347
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