Gerbil: a fast and memory-efficient k-mer counter with GPU-support

BACKGROUND: A basic task in bioinformatics is the counting of k-mers in genome sequences. Existing k-mer counting tools are most often optimized for small k < 32 and suffer from excessive memory resource consumption or degrading performance for large k. However, given the technology trend towards...

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Detalles Bibliográficos
Autores principales: Erbert, Marius, Rechner, Steffen, Müller-Hannemann, Matthias
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5374613/
https://www.ncbi.nlm.nih.gov/pubmed/28373894
http://dx.doi.org/10.1186/s13015-017-0097-9

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5374613/
https://www.ncbi.nlm.nih.gov/pubmed/28373894
http://dx.doi.org/10.1186/s13015-017-0097-9

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