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Gerbil: a fast and memory-efficient k-mer counter with GPU-support
BACKGROUND: A basic task in bioinformatics is the counting of k-mers in genome sequences. Existing k-mer counting tools are most often optimized for small k < 32 and suffer from excessive memory resource consumption or degrading performance for large k. However, given the technology trend towards...
| Autores principales: | , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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BioMed Central
2017
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5374613/ https://www.ncbi.nlm.nih.gov/pubmed/28373894 http://dx.doi.org/10.1186/s13015-017-0097-9 |