SILVA, RDP, Greengenes, NCBI and OTT — how do these taxonomies compare?

BACKGROUND: A key step in microbiome sequencing analysis is read assignment to taxonomic units. This is often performed using one of four taxonomic classifications, namely SILVA, RDP, Greengenes or NCBI. It is unclear how similar these are and how to compare analysis results that are based on differ...

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Detalles Bibliográficos
Autores principales: Balvočiūtė, Monika, Huson, Daniel H.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2017
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5374703/
https://www.ncbi.nlm.nih.gov/pubmed/28361695
http://dx.doi.org/10.1186/s12864-017-3501-4

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5374703/
https://www.ncbi.nlm.nih.gov/pubmed/28361695
http://dx.doi.org/10.1186/s12864-017-3501-4

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