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SILVA, RDP, Greengenes, NCBI and OTT — how do these taxonomies compare?
BACKGROUND: A key step in microbiome sequencing analysis is read assignment to taxonomic units. This is often performed using one of four taxonomic classifications, namely SILVA, RDP, Greengenes or NCBI. It is unclear how similar these are and how to compare analysis results that are based on differ...
| Autores principales: | , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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BioMed Central
2017
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5374703/ https://www.ncbi.nlm.nih.gov/pubmed/28361695 http://dx.doi.org/10.1186/s12864-017-3501-4 |