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A redox-mediated Kemp eliminase

The acid/base-catalysed Kemp elimination of 5-nitro-benzisoxazole forming 2-cyano-4-nitrophenol has long served as a design platform of enzymes with non-natural reactions, providing new mechanistic insights in protein science. Here we describe an alternative concept based on redox catalysis by P450-...

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Autores principales: Li, Aitao, Wang, Binju, Ilie, Adriana, Dubey, Kshatresh D., Bange, Gert, Korendovych, Ivan V., Shaik, Sason, Reetz, Manfred T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5379065/
https://www.ncbi.nlm.nih.gov/pubmed/28348375
http://dx.doi.org/10.1038/ncomms14876
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author Li, Aitao
Wang, Binju
Ilie, Adriana
Dubey, Kshatresh D.
Bange, Gert
Korendovych, Ivan V.
Shaik, Sason
Reetz, Manfred T.
author_facet Li, Aitao
Wang, Binju
Ilie, Adriana
Dubey, Kshatresh D.
Bange, Gert
Korendovych, Ivan V.
Shaik, Sason
Reetz, Manfred T.
author_sort Li, Aitao
collection PubMed
description The acid/base-catalysed Kemp elimination of 5-nitro-benzisoxazole forming 2-cyano-4-nitrophenol has long served as a design platform of enzymes with non-natural reactions, providing new mechanistic insights in protein science. Here we describe an alternative concept based on redox catalysis by P450-BM3, leading to the same Kemp product via a fundamentally different mechanism. QM/MM computations show that it involves coordination of the substrate's N-atom to haem-Fe(II) with electron transfer and concomitant N–O heterolysis liberating an intermediate having a nitrogen radical moiety Fe(III)–N· and a phenoxyl anion. Product formation occurs by bond rotation and H-transfer. Two rationally chosen point mutations cause a notable increase in activity. The results shed light on the prevailing mechanistic uncertainties in human P450-catalysed metabolism of the immunomodulatory drug leflunomide, which likewise undergoes redox-mediated Kemp elimination by P450-BM3. Other isoxazole-based pharmaceuticals are probably also metabolized by a redox mechanism. Our work provides a basis for designing future artificial enzymes.
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spelling pubmed-53790652017-04-11 A redox-mediated Kemp eliminase Li, Aitao Wang, Binju Ilie, Adriana Dubey, Kshatresh D. Bange, Gert Korendovych, Ivan V. Shaik, Sason Reetz, Manfred T. Nat Commun Article The acid/base-catalysed Kemp elimination of 5-nitro-benzisoxazole forming 2-cyano-4-nitrophenol has long served as a design platform of enzymes with non-natural reactions, providing new mechanistic insights in protein science. Here we describe an alternative concept based on redox catalysis by P450-BM3, leading to the same Kemp product via a fundamentally different mechanism. QM/MM computations show that it involves coordination of the substrate's N-atom to haem-Fe(II) with electron transfer and concomitant N–O heterolysis liberating an intermediate having a nitrogen radical moiety Fe(III)–N· and a phenoxyl anion. Product formation occurs by bond rotation and H-transfer. Two rationally chosen point mutations cause a notable increase in activity. The results shed light on the prevailing mechanistic uncertainties in human P450-catalysed metabolism of the immunomodulatory drug leflunomide, which likewise undergoes redox-mediated Kemp elimination by P450-BM3. Other isoxazole-based pharmaceuticals are probably also metabolized by a redox mechanism. Our work provides a basis for designing future artificial enzymes. Nature Publishing Group 2017-03-28 /pmc/articles/PMC5379065/ /pubmed/28348375 http://dx.doi.org/10.1038/ncomms14876 Text en Copyright © 2017, The Author(s) http://creativecommons.org/licenses/by/4.0/ This work is licensed under a Creative Commons Attribution 4.0 International License. The images or other third party material in this article are included in the article's Creative Commons license, unless indicated otherwise in the credit line; if the material is not included under the Creative Commons license, users will need to obtain permission from the license holder to reproduce the material. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/
spellingShingle Article
Li, Aitao
Wang, Binju
Ilie, Adriana
Dubey, Kshatresh D.
Bange, Gert
Korendovych, Ivan V.
Shaik, Sason
Reetz, Manfred T.
A redox-mediated Kemp eliminase
title A redox-mediated Kemp eliminase
title_full A redox-mediated Kemp eliminase
title_fullStr A redox-mediated Kemp eliminase
title_full_unstemmed A redox-mediated Kemp eliminase
title_short A redox-mediated Kemp eliminase
title_sort redox-mediated kemp eliminase
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5379065/
https://www.ncbi.nlm.nih.gov/pubmed/28348375
http://dx.doi.org/10.1038/ncomms14876
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