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Exome Sequence Analysis of 14 Families With High Myopia
PURPOSE: To identify causal gene mutations in 14 families with autosomal dominant (AD) high myopia using exome sequencing. METHODS: Select individuals from 14 large Caucasian families with high myopia were exome sequenced. Gene variants were filtered to identify potential pathogenic changes. Sanger...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Association for Research in Vision and Ophthalmology
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5382835/ https://www.ncbi.nlm.nih.gov/pubmed/28384719 http://dx.doi.org/10.1167/iovs.16-20883 |
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author | Kloss, Bethany A. Tompson, Stuart W. Whisenhunt, Kristina N. Quow, Krystina L. Huang, Samuel J. Pavelec, Derek M. Rosenberg, Thomas Young, Terri L. |
author_facet | Kloss, Bethany A. Tompson, Stuart W. Whisenhunt, Kristina N. Quow, Krystina L. Huang, Samuel J. Pavelec, Derek M. Rosenberg, Thomas Young, Terri L. |
author_sort | Kloss, Bethany A. |
collection | PubMed |
description | PURPOSE: To identify causal gene mutations in 14 families with autosomal dominant (AD) high myopia using exome sequencing. METHODS: Select individuals from 14 large Caucasian families with high myopia were exome sequenced. Gene variants were filtered to identify potential pathogenic changes. Sanger sequencing was used to confirm variants in original DNA, and to test for disease cosegregation in additional family members. Candidate genes and chromosomal loci previously associated with myopic refractive error and its endophenotypes were comprehensively screened. RESULTS: In 14 high myopia families, we identified 73 rare and 31 novel gene variants as candidates for pathogenicity. In seven of these families, two of the novel and eight of the rare variants were within known myopia loci. A total of 104 heterozygous nonsynonymous rare variants in 104 genes were identified in 10 out of 14 probands. Each variant cosegregated with affection status. No rare variants were identified in genes known to cause myopia or in genes closest to published genome-wide association study association signals for refractive error or its endophenotypes. CONCLUSIONS: Whole exome sequencing was performed to determine gene variants implicated in the pathogenesis of AD high myopia. This study provides new genes for consideration in the pathogenesis of high myopia, and may aid in the development of genetic profiling of those at greatest risk for attendant ocular morbidities of this disorder. |
format | Online Article Text |
id | pubmed-5382835 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | The Association for Research in Vision and Ophthalmology |
record_format | MEDLINE/PubMed |
spelling | pubmed-53828352017-04-07 Exome Sequence Analysis of 14 Families With High Myopia Kloss, Bethany A. Tompson, Stuart W. Whisenhunt, Kristina N. Quow, Krystina L. Huang, Samuel J. Pavelec, Derek M. Rosenberg, Thomas Young, Terri L. Invest Ophthalmol Vis Sci Genetics PURPOSE: To identify causal gene mutations in 14 families with autosomal dominant (AD) high myopia using exome sequencing. METHODS: Select individuals from 14 large Caucasian families with high myopia were exome sequenced. Gene variants were filtered to identify potential pathogenic changes. Sanger sequencing was used to confirm variants in original DNA, and to test for disease cosegregation in additional family members. Candidate genes and chromosomal loci previously associated with myopic refractive error and its endophenotypes were comprehensively screened. RESULTS: In 14 high myopia families, we identified 73 rare and 31 novel gene variants as candidates for pathogenicity. In seven of these families, two of the novel and eight of the rare variants were within known myopia loci. A total of 104 heterozygous nonsynonymous rare variants in 104 genes were identified in 10 out of 14 probands. Each variant cosegregated with affection status. No rare variants were identified in genes known to cause myopia or in genes closest to published genome-wide association study association signals for refractive error or its endophenotypes. CONCLUSIONS: Whole exome sequencing was performed to determine gene variants implicated in the pathogenesis of AD high myopia. This study provides new genes for consideration in the pathogenesis of high myopia, and may aid in the development of genetic profiling of those at greatest risk for attendant ocular morbidities of this disorder. The Association for Research in Vision and Ophthalmology 2017-04 /pmc/articles/PMC5382835/ /pubmed/28384719 http://dx.doi.org/10.1167/iovs.16-20883 Text en Copyright 2017 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This work is licensed under a Creative Commons Attribution-NonCommercial-NoDerivatives 4.0 International License. |
spellingShingle | Genetics Kloss, Bethany A. Tompson, Stuart W. Whisenhunt, Kristina N. Quow, Krystina L. Huang, Samuel J. Pavelec, Derek M. Rosenberg, Thomas Young, Terri L. Exome Sequence Analysis of 14 Families With High Myopia |
title | Exome Sequence Analysis of 14 Families With High Myopia |
title_full | Exome Sequence Analysis of 14 Families With High Myopia |
title_fullStr | Exome Sequence Analysis of 14 Families With High Myopia |
title_full_unstemmed | Exome Sequence Analysis of 14 Families With High Myopia |
title_short | Exome Sequence Analysis of 14 Families With High Myopia |
title_sort | exome sequence analysis of 14 families with high myopia |
topic | Genetics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5382835/ https://www.ncbi.nlm.nih.gov/pubmed/28384719 http://dx.doi.org/10.1167/iovs.16-20883 |
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