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Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors
Molecular changes underlying stem cell differentiation are of fundamental interest. scRNA-seq on murine hematopoietic stem cells (HSC) and their progeny MPP1 separated the cells into 3 main clusters with distinct features: active, quiescent, and an un-characterized cluster. Induction of anemia resul...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5388401/ https://www.ncbi.nlm.nih.gov/pubmed/28003475 http://dx.doi.org/10.1093/nar/gkw1214 |
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author | Yang, Jennifer Tanaka, Yoshiaki Seay, Montrell Li, Zhen Jin, Jiaqi Garmire, Lana Xia Zhu, Xun Taylor, Ashley Li, Weidong Euskirchen, Ghia Halene, Stephanie Kluger, Yuval Snyder, Michael P. Park, In-Hyun Pan, Xinghua Weissman, Sherman Morton |
author_facet | Yang, Jennifer Tanaka, Yoshiaki Seay, Montrell Li, Zhen Jin, Jiaqi Garmire, Lana Xia Zhu, Xun Taylor, Ashley Li, Weidong Euskirchen, Ghia Halene, Stephanie Kluger, Yuval Snyder, Michael P. Park, In-Hyun Pan, Xinghua Weissman, Sherman Morton |
author_sort | Yang, Jennifer |
collection | PubMed |
description | Molecular changes underlying stem cell differentiation are of fundamental interest. scRNA-seq on murine hematopoietic stem cells (HSC) and their progeny MPP1 separated the cells into 3 main clusters with distinct features: active, quiescent, and an un-characterized cluster. Induction of anemia resulted in mobilization of the quiescent to the active cluster and of the early to later stage of cell cycle, with marked increase in expression of certain transcription factors (TFs) while maintaining expression of interferon response genes. Cells with surface markers of long term HSC increased the expression of a group of TFs expressed highly in normal cycling MPP1 cells. However, at least Id1 and Hes1 were significantly activated in both HSC and MPP1 cells in anemic mice. Lineage-specific genes were differently expressed between cells, and correlated with the cell cycle stages with a specific augmentation of erythroid related genes in the G2/M phase. Most lineage specific TFs were stochastically expressed in the early precursor cells, but a few, such as Klf1, were detected only at very low levels in few precursor cells. The activation of these factors may correlate with stages of differentiation. This study reveals effects of cell cycle progression on the expression of lineage specific genes in precursor cells, and suggests that hematopoietic stress changes the balance of renewal and differentiation in these homeostatic cells. |
format | Online Article Text |
id | pubmed-5388401 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-53884012017-04-18 Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors Yang, Jennifer Tanaka, Yoshiaki Seay, Montrell Li, Zhen Jin, Jiaqi Garmire, Lana Xia Zhu, Xun Taylor, Ashley Li, Weidong Euskirchen, Ghia Halene, Stephanie Kluger, Yuval Snyder, Michael P. Park, In-Hyun Pan, Xinghua Weissman, Sherman Morton Nucleic Acids Res Genomics Molecular changes underlying stem cell differentiation are of fundamental interest. scRNA-seq on murine hematopoietic stem cells (HSC) and their progeny MPP1 separated the cells into 3 main clusters with distinct features: active, quiescent, and an un-characterized cluster. Induction of anemia resulted in mobilization of the quiescent to the active cluster and of the early to later stage of cell cycle, with marked increase in expression of certain transcription factors (TFs) while maintaining expression of interferon response genes. Cells with surface markers of long term HSC increased the expression of a group of TFs expressed highly in normal cycling MPP1 cells. However, at least Id1 and Hes1 were significantly activated in both HSC and MPP1 cells in anemic mice. Lineage-specific genes were differently expressed between cells, and correlated with the cell cycle stages with a specific augmentation of erythroid related genes in the G2/M phase. Most lineage specific TFs were stochastically expressed in the early precursor cells, but a few, such as Klf1, were detected only at very low levels in few precursor cells. The activation of these factors may correlate with stages of differentiation. This study reveals effects of cell cycle progression on the expression of lineage specific genes in precursor cells, and suggests that hematopoietic stress changes the balance of renewal and differentiation in these homeostatic cells. Oxford University Press 2017-02-17 2016-12-20 /pmc/articles/PMC5388401/ /pubmed/28003475 http://dx.doi.org/10.1093/nar/gkw1214 Text en © The Author(s) 2016. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Genomics Yang, Jennifer Tanaka, Yoshiaki Seay, Montrell Li, Zhen Jin, Jiaqi Garmire, Lana Xia Zhu, Xun Taylor, Ashley Li, Weidong Euskirchen, Ghia Halene, Stephanie Kluger, Yuval Snyder, Michael P. Park, In-Hyun Pan, Xinghua Weissman, Sherman Morton Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors |
title | Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors |
title_full | Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors |
title_fullStr | Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors |
title_full_unstemmed | Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors |
title_short | Single cell transcriptomics reveals unanticipated features of early hematopoietic precursors |
title_sort | single cell transcriptomics reveals unanticipated features of early hematopoietic precursors |
topic | Genomics |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5388401/ https://www.ncbi.nlm.nih.gov/pubmed/28003475 http://dx.doi.org/10.1093/nar/gkw1214 |
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