Cargando…

Comparison of different cell type correction methods for genome-scale epigenetics studies

BACKGROUND: Whole blood is frequently utilized in genome-wide association studies of DNA methylation patterns in relation to environmental exposures or clinical outcomes. These associations can be confounded by cellular heterogeneity. Algorithms have been developed to measure or adjust for this hete...

Descripción completa

Detalles Bibliográficos
Autores principales:	Kaushal, Akhilesh, Zhang, Hongmei, Karmaus, Wilfried J. J., Ray, Meredith, Torres, Mylin A., Smith, Alicia K., Wang, Shu-Li
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2017
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5391562/ https://www.ncbi.nlm.nih.gov/pubmed/28410574 http://dx.doi.org/10.1186/s12859-017-1611-2

Ejemplares similares

Which methods to choose to correct cell types in genome-scale blood-derived DNA methylation data?
por: Kaushal, Akhilesh, et al.
Publicado: (2015)

Can we apply the Mendelian randomization methodology without considering epigenetic effects?
por: Ogbuanu, Ikechukwu U, et al.
Publicado: (2009)

Genome-wide DNA methylation at birth in relation to in utero arsenic exposure and the associated health in later life
por: Kaushal, Akhilesh, et al.
Publicado: (2017)

Screening genome-wide DNA methylation CpG sites via training and testing data utilizing surrogate variables
por: Ray, Meredith, et al.
Publicado: (2014)

An Efficient Approach to Screening Epigenome-Wide Data
por: Ray, Meredith A., et al.
Publicado: (2016)

Association of Asthma and Rhinitis with Epigenetics of Coronavirus Related Genes
por: Rathod, Aniruddha, et al.
Publicado: (2021)

Interweaving Between Genetic and Epigenetic Studies on Childhood Asthma
por: Rathod, Aniruddha, et al.
Publicado: (2020)

Changes in DNA Methylation from Age 18 to Pregnancy in Type 1, 2, and 17 T Helper and Regulatory T-Cells Pathway Genes
por: Iqbal, Sabrina, et al.
Publicado: (2018)

Offspring epigenetic markers at birth related to gestational BMI predict offspring BMI‐trajectories from infancy to 26 years
por: Janjanam, Vimala Devi, et al.
Publicado: (2023)

DNA Methylation at Birth is Associated with Childhood Serum Immunoglobulin E Levels
por: Han, Luhang, et al.
Publicado: (2021)

Infant feeding pattern in the first six months of age in USA: a follow-up study
por: Karmaus, Wilfried, et al.
Publicado: (2017)

Epigenome-Wide Association Study Reveals Duration of Breastfeeding Is Associated with Epigenetic Differences in Children
por: Sherwood, William B., et al.
Publicado: (2020)

Changes in DNA methylation from pre- to post-adolescence are associated with pubertal exposures
por: Han, Luhang, et al.
Publicado: (2019)

Epidemiologic Methods of Assessing Asthma and Wheezing Episodes in Longitudinal Studies: Measures of Change and Stability
por: Soto-Ramírez, Nelís, et al.
Publicado: (2013)

Adjusting wheal size measures to correct atopy misclassification
por: Zhang, Hongmei, et al.
Publicado: (2011)

The association of infant feeding patterns with food allergy symptoms and food allergy in early childhood
por: Mathias, Joacy G., et al.
Publicado: (2019)

Backward Estimation of Exposure to Organochlorines using Repeated Measurements
por: Karmaus, Wilfried
Publicado: (2004)

Developmental trajectories of Body Mass Index from infancy to 18 years of age: prenatal determinants and health consequences
por: Ziyab, Ali H, et al.
Publicado: (2014)

A cross-sectional study of the association of age, race and ethnicity, and body mass index with sex steroid hormone marker profiles among men in the National Health and Nutrition Examination Survey (NHANES III)
por: Ritchey, Jamie, et al.
Publicado: (2012)

Identifying CpG sites associated with eczema via random forest screening of epigenome-scale DNA methylation
por: Quraishi, B. M., et al.
Publicado: (2015)

Maternal concentration of polychlorinated biphenyls and dichlorodiphenyl dichlorethylene and birth weight in Michigan fish eaters: a cohort study
por: Karmaus, Wilfried, et al.
Publicado: (2004)

Maternal immune markers in serum during gestation and in breast milk and the risk of asthma-like symptoms at ages 6 and 12 months: a longitudinal study
por: Soto-Ramírez, Nelís, et al.
Publicado: (2012)

Prediction of Unmet Primary Care Needs for the Medically Vulnerable Post-Disaster: An Interrupted Time-Series Analysis of Health System Responses
por: Runkle, Jennifer D., et al.
Publicado: (2012)

Maternal serum but not breast milk IL-5, IL-6, and IL-13 immune markers are associated with scratching among infants
por: Soto-Ramírez, Nelís, et al.
Publicado: (2016)

Eczema among adolescents in Kuwait: Prevalence, severity, sleep disturbance, antihistamine use, and risk factors()
por: Ziyab, Ali H., et al.
Publicado: (2022)

The interplay of DNA methylation over time with Th2 pathway genetic variants on asthma risk and temporal asthma transition
por: Zhang, Hongmei, et al.
Publicado: (2014)

Oxidative Stress-Related Genetic Variants May Modify Associations of Phthalate Exposures with Asthma
por: Wang, I-Jen, et al.
Publicado: (2017)

Leptin receptor gene polymorphisms and sex modify the association between acetaminophen use and asthma among young adults: results from two observational studies
por: Ziyab, Ali H., et al.
Publicado: (2018)

Epigenome-wide association study of asthma and wheeze characterizes loci within HK1
por: Everson, Todd M., et al.
Publicado: (2019)

The role of a parental history of Balkan endemic nephropathy in the occurrence of BEN: a prospective study
por: Hanjangsit, Kesinee, et al.
Publicado: (2012)

Storage of serum in plastic and glass containers may alter the serum concentration of polychlorinated biphenyls.
por: Karmaus, Wilfried, et al.
Publicado: (2004)

The use of oral contraceptive before pregnancy and breastfeeding duration: A cross-sectional study with retrospective ascertainment
por: Soto-Ramírez, Nelís, et al.
Publicado: (2008)

Methylation of Host Genes Associated with Coronavirus Infection from Birth to 26 Years
por: Rathod, Rutu, et al.
Publicado: (2021)

Association of childhood BMI trajectory with post-adolescent and adult lung function is mediated by pre-adolescent DNA methylation
por: Rathod, Rutu, et al.
Publicado: (2022)

Birth order modifies the effect of IL13 gene polymorphisms on serum IgE at age 10 and skin prick test at ages 4, 10 and 18: a prospective birth cohort study
por: Ogbuanu, Ikechukwu U, et al.
Publicado: (2010)

Distinctive lung function trajectories from age 10 to 26 years in men and women and associated early life risk factors – a birth cohort study
por: Karmaus, Wilfried, et al.
Publicado: (2019)

Does DNA methylation mediate the association of age at puberty with forced vital capacity or forced expiratory volume in 1 s?
por: Li, Liang, et al.
Publicado: (2022)

Genome-scale epigenetic reprogramming during epithelial to mesenchymal transition
por: McDonald, Oliver G., et al.
Publicado: (2011)

Sex differences in the intergenerational link between maternal and neonatal whole blood DNA methylation: a genome-wide analysis in 2 birth cohorts
por: Hu, Jie, et al.
Publicado: (2023)

Effect of GSTM2-5 polymorphisms in relation to tobacco smoke exposures on lung function growth: a birth cohort study
por: Alexander, Melannie, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_4j8mpsc8tuac314s9hqiu0eu0u