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ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins

Adenosine deaminases acting on RNA (ADARs) catalyze the editing of adenosine residues to inosine (A-to-I) within RNA sequences, mostly in the introns and UTRs (un-translated regions). The significance of editing within non-coding regions of RNA is poorly understood. Here, we demonstrate that associa...

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Autores principales: Anantharaman, Aparna, Tripathi, Vidisha, Khan, Abid, Yoon, Je-Hyun, Singh, Deepak K., Gholamalamdari, Omid, Guang, Shuomeng, Ohlson, Johan, Wahlstedt, Helene, Öhman, Marie, Jantsch, Michael F., Conrad, Nicholas K., Ma, Jian, Gorospe, Myriam, Prasanth, Supriya G., Prasanth, Kannanganattu V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2017
Materias:
RNA
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397167/
https://www.ncbi.nlm.nih.gov/pubmed/28053121
http://dx.doi.org/10.1093/nar/gkw1304
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author Anantharaman, Aparna
Tripathi, Vidisha
Khan, Abid
Yoon, Je-Hyun
Singh, Deepak K.
Gholamalamdari, Omid
Guang, Shuomeng
Ohlson, Johan
Wahlstedt, Helene
Öhman, Marie
Jantsch, Michael F.
Conrad, Nicholas K.
Ma, Jian
Gorospe, Myriam
Prasanth, Supriya G.
Prasanth, Kannanganattu V.
author_facet Anantharaman, Aparna
Tripathi, Vidisha
Khan, Abid
Yoon, Je-Hyun
Singh, Deepak K.
Gholamalamdari, Omid
Guang, Shuomeng
Ohlson, Johan
Wahlstedt, Helene
Öhman, Marie
Jantsch, Michael F.
Conrad, Nicholas K.
Ma, Jian
Gorospe, Myriam
Prasanth, Supriya G.
Prasanth, Kannanganattu V.
author_sort Anantharaman, Aparna
collection PubMed
description Adenosine deaminases acting on RNA (ADARs) catalyze the editing of adenosine residues to inosine (A-to-I) within RNA sequences, mostly in the introns and UTRs (un-translated regions). The significance of editing within non-coding regions of RNA is poorly understood. Here, we demonstrate that association of ADAR2 with RNA stabilizes a subset of transcripts. ADAR2 interacts with and edits the 3΄UTR of nuclear-retained Cat2 transcribed nuclear RNA (Ctn RNA). In absence of ADAR2, the abundance and half-life of Ctn RNA are significantly reduced. Furthermore, ADAR2-mediated stabilization of Ctn RNA occurred in an editing-independent manner. Unedited Ctn RNA shows enhanced interaction with the RNA-binding proteins HuR and PARN [Poly(A) specific ribonuclease deadenylase]. HuR and PARN destabilize Ctn RNA in absence of ADAR2, indicating that ADAR2 stabilizes Ctn RNA by antagonizing its degradation by PARN and HuR. Transcriptomic analysis identified other RNAs that are regulated by a similar mechanism. In summary, we identify a regulatory mechanism whereby ADAR2 enhances target RNA stability by limiting the interaction of RNA-destabilizing proteins with their cognate substrates.
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spelling pubmed-53971672017-04-24 ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins Anantharaman, Aparna Tripathi, Vidisha Khan, Abid Yoon, Je-Hyun Singh, Deepak K. Gholamalamdari, Omid Guang, Shuomeng Ohlson, Johan Wahlstedt, Helene Öhman, Marie Jantsch, Michael F. Conrad, Nicholas K. Ma, Jian Gorospe, Myriam Prasanth, Supriya G. Prasanth, Kannanganattu V. Nucleic Acids Res RNA Adenosine deaminases acting on RNA (ADARs) catalyze the editing of adenosine residues to inosine (A-to-I) within RNA sequences, mostly in the introns and UTRs (un-translated regions). The significance of editing within non-coding regions of RNA is poorly understood. Here, we demonstrate that association of ADAR2 with RNA stabilizes a subset of transcripts. ADAR2 interacts with and edits the 3΄UTR of nuclear-retained Cat2 transcribed nuclear RNA (Ctn RNA). In absence of ADAR2, the abundance and half-life of Ctn RNA are significantly reduced. Furthermore, ADAR2-mediated stabilization of Ctn RNA occurred in an editing-independent manner. Unedited Ctn RNA shows enhanced interaction with the RNA-binding proteins HuR and PARN [Poly(A) specific ribonuclease deadenylase]. HuR and PARN destabilize Ctn RNA in absence of ADAR2, indicating that ADAR2 stabilizes Ctn RNA by antagonizing its degradation by PARN and HuR. Transcriptomic analysis identified other RNAs that are regulated by a similar mechanism. In summary, we identify a regulatory mechanism whereby ADAR2 enhances target RNA stability by limiting the interaction of RNA-destabilizing proteins with their cognate substrates. Oxford University Press 2017-04-20 2017-01-04 /pmc/articles/PMC5397167/ /pubmed/28053121 http://dx.doi.org/10.1093/nar/gkw1304 Text en © The Author(s) 2017. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle RNA
Anantharaman, Aparna
Tripathi, Vidisha
Khan, Abid
Yoon, Je-Hyun
Singh, Deepak K.
Gholamalamdari, Omid
Guang, Shuomeng
Ohlson, Johan
Wahlstedt, Helene
Öhman, Marie
Jantsch, Michael F.
Conrad, Nicholas K.
Ma, Jian
Gorospe, Myriam
Prasanth, Supriya G.
Prasanth, Kannanganattu V.
ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins
title ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins
title_full ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins
title_fullStr ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins
title_full_unstemmed ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins
title_short ADAR2 regulates RNA stability by modifying access of decay-promoting RNA-binding proteins
title_sort adar2 regulates rna stability by modifying access of decay-promoting rna-binding proteins
topic RNA
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5397167/
https://www.ncbi.nlm.nih.gov/pubmed/28053121
http://dx.doi.org/10.1093/nar/gkw1304
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