Cargando…
switchde: inference of switch-like differential expression along single-cell trajectories
MOTIVATION: Pseudotime analyses of single-cell RNA-seq data have become increasingly common. Typically, a latent trajectory corresponding to a biological process of interest—such as differentiation or cell cycle—is discovered. However, relatively little attention has been paid to modelling the diffe...
Autores principales: | Campbell, Kieran R, Yau, Christopher |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2017
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5408844/ https://www.ncbi.nlm.nih.gov/pubmed/28011787 http://dx.doi.org/10.1093/bioinformatics/btw798 |
Ejemplares similares
-
TSIS: an R package to infer alternative splicing isoform switches for time-series data
por: Guo, Wenbin, et al.
Publicado: (2017) -
LocalNgsRelate: a software tool for inferring IBD sharing along the genome between pairs of individuals from low-depth NGS data
por: Severson, Alissa L, et al.
Publicado: (2021) -
SomaticSignatures: inferring mutational signatures from single-nucleotide variants
por: Gehring, Julian S., et al.
Publicado: (2015) -
scphaser: haplotype inference using single-cell RNA-seq data
por: Edsgärd, Daniel, et al.
Publicado: (2016) -
scMEGA: single-cell multi-omic enhancer-based gene regulatory network inference
por: Li, Zhijian, et al.
Publicado: (2023)